PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G343700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 238aa    MW: 26483.6 Da    PI: 8.4427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G343700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08185233146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                         r++W +  ++ l ++v+++G+g+Wk I    +     R+  + k+++++
  Brast04G343700.1.p 185 RKNWIEMQEKTLMEGVEKYGKGNWKEIKIAYPdvfGDRSTVDMKDKFRN 233
                         789*****************************99999**9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.187180237IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-9181235IPR009057Homeodomain-like
SuperFamilySSF466893.28E-11182235IPR009057Homeodomain-like
SMARTSM007171.4E-4184237IPR001005SANT/Myb domain
PfamPF002499.1E-7185234IPR001005SANT/Myb domain
CDDcd116606.68E-16186236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
ADLPPSTLEI AADRIAGAGA LHTWANADQD TRQKLRLLES MELDILGKLG PDPSKVDKGA  60
STSGADEADL TRESSKSDHD QEGCTRQDPA KRTTDAQLTQ NLLTSATIKG KDKATSSYVT  120
GLVAPDNHKS HPVIGSKRGL MERSHTTTVY EWDDLGDSDH ERVPHKRQLP TYKKKPGPSF  180
PHKSRKNWIE MQEKTLMEGV EKYGKGNWKE IKIAYPDVFG DRSTVDMKDK FRNMERR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173185KKPGPSFPHKSRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G343700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559737.11e-135uncharacterized protein LOC100834855
RefseqXP_010233480.11e-135uncharacterized protein LOC100834855
TrEMBLI1GQT31e-134I1GQT3_BRADI; Uncharacterized protein
STRINGBRADI1G16355.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-10TRF-like 5