PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G005600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 405aa MW: 42893.1 Da PI: 4.4257

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G005600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.2	3.6e-15	18	139	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyat..gkrknratksgyWkatgk 88 G+rFhP+ ee ++ yL+ ++g + +++ +i+++ +y+ P dL +++ ++++ yf+s+ ++ + g r +ra++ W + Brast05G005600.1.p 18 FGLRFHPSAEEAISVYLRCWIAGAPvPDAAGIIHHAAVYSRPPADLAAAFPRlpRTHDRYFYSTCRRVPIRggGYRVSRAVAGVSWGSNT- 107 79*********************4445567**********85333333566889999998876642378**999999664. PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +k+v ++ +ge g +tL + ktdW+m+e++ Brast05G005600.1.p 108 NKPVEDAmTGEXLGFVETLKYG--------KTDWLMEEFH 139 4777774466667777777765........9********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-21	12	161	IPR003441	NAC domain
PROSITE profile	PS51005	19.993	16	161	IPR003441	NAC domain
Pfam	PF02365	2.9E-8	19	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MAAPLPSTVL SPIAALSFGL RFHPSAEEAI SVYLRCWIAG APVPDAAGII HHAAVYSRPP 60 ADLAAAFPRL PRTHDRYFYS TCRRVPIRGG GYRVSRAVAG VSWGSNTNKP VEDAMTGEXL 120 GFVETLKYGK TDWLMEEFHR LPEDAAADGA AERVLCRLYV KGHAKPDSLA LAESLAGDLL 180 LQQAAMADAQ QRMPPSSPRN RRVMALPVLP EPAPVKKRAA PVAEPPRPKK RTRAAAPAAS 240 PVMASPPAPP AVPRVALRQL PRPSWCPPPP AGLLALEPRR PAPAVASAAZ XSPAAAAAHD 300 ELVALVLSGV EEEDDSAAGQ EDDDDQDLGD FASALETDLE TTEEDGGGDA GSRSLEGLAA 360 DERGDDDIAM DMDDVFNDLG DEEDDGDGAW KSIPLSDYTD LQYS*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MAAPLPSTVL SPIAALSFGL RFHPSAEEAI SVYLRCWIAG APVPDAAGII HHAAVYSRPP  60
ADLAAAFPRL PRTHDRYFYS TCRRVPIRGG GYRVSRAVAG VSWGSNTNKP VEDAMTGEXL  120
GFVETLKYGK TDWLMEEFHR LPEDAAADGA AERVLCRLYV KGHAKPDSLA LAESLAGDLL  180
LQQAAMADAQ QRMPPSSPRN RRVMALPVLP EPAPVKKRAA PVAEPPRPKK RTRAAAPAAS  240
PVMASPPAPP AVPRVALRQL PRPSWCPPPP AGLLALEPRR PAPAVASAAZ XSPAAAAAHD  300
ELVALVLSGV EEEDDSAAGQ EDDDDQDLGD FASALETDLE TTEEDGGGDA GSRSLEGLAA  360
DERGDDDIAM DMDDVFNDLG DEEDDGDGAW KSIPLSDYTD LQYS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	201	RMPPSSPRNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G005600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239312.1	1e-144	uncharacterized protein LOC104585070
TrEMBL	A0A0Q3EQ52	1e-141	A0A0Q3EQ52_BRADI; Uncharacterized protein
STRING	BRADI4G26470.1	1e-102	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22621	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	4e-14	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	Brast05G005600.1.p