PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G020900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 808aa    MW: 90119.4 Da    PI: 8.869
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G020900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.85.3e-22113209186
            trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                         +Wt ++v++Li+a++++ e+   +           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ + + +++++ + +
  Brast05G020900.1.p 113 KWTGSMVKLLITAVSYTAEDPWPDLncgkrngtmvQKKGKWKAISKVMCERGCNVSPQQCEDKFNDLNKRYKRLTDILGCGiACDVVGNPA 203
                         7**************66555554322233566677*****************************************999886788777777 PP

            trihelix  81 yfdqle 86 
                         ++d ++
  Brast05G020900.1.p 204 LLDGMD 209
                         777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-17111237No hitNo description
SuperFamilySSF813834.06E-6408461IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.8E-6414461No hitNo description
PfamPF006465.2E-11417470IPR001810F-box domain
SuperFamilySSF545182.88E-92467654IPR025659Tubby C-terminal-like domain
Gene3DG3DSA:3.20.90.108.6E-85477650IPR000007Tubby, C-terminal
PfamPF011675.4E-88482800IPR000007Tubby, C-terminal
PRINTSPR015731.3E-67534550IPR000007Tubby, C-terminal
PRINTSPR015731.3E-67550574IPR000007Tubby, C-terminal
PRINTSPR015731.3E-67600627IPR000007Tubby, C-terminal
Gene3DG3DSA:3.20.90.108.6E-85697800IPR000007Tubby, C-terminal
SuperFamilySSF545182.88E-92701807IPR025659Tubby C-terminal-like domain
PRINTSPR015731.3E-67707724IPR000007Tubby, C-terminal
PRINTSPR015731.3E-67725741IPR000007Tubby, C-terminal
PROSITE patternPS012000725738IPR018066Tubby, C-terminal, conserved site
PRINTSPR015731.3E-67764783IPR000007Tubby, C-terminal
PRINTSPR015731.3E-67785807IPR000007Tubby, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MEGGNLPPGN PMQGTPFGSL NGRGSSMQMH VPCSGKQLFN QPLMPRSFTM PVNRIQEPDR  60
LPGFQFGEHG KVDHHQQQHS HRLTNSPSDE EEHDMTEDVG GKGKNGSAWH RVKWTGSMVK  120
LLITAVSYTA EDPWPDLNCG KRNGTMVQKK GKWKAISKVM CERGCNVSPQ QCEDKFNDLN  180
KRYKRLTDIL GCGIACDVVG NPALLDGMDN LNLSDKMKED ARKILSSKHL FYEEMCSYHN  240
NNRVSLPEDP ELQHSLKLAL ICKEDRGPRK DTSGDERSAD SDYEENDEWH RAVRTNMNKR  300
MCRTVDHVDV GSVPSSSKDG SGRFDPHGIT LDINKGLPDG TNRSSPQKDL ASQAAELQKR  360
RLQIEMSFRS IVRDVRDGFG SLSQRRFESR LLGHCRGKSH GAVHELHDPV PVIQSSCWAN  420
LPPELLRDVI ERLEASEATW PCRRNVVACA AVCKTWREMC KEIVKNPEDC GKLTFPVSLK  480
QPGPRDGIIQ CFIKRDRSTQ TYYLYLSLSS AVLVENGKFL LSAKRICRAT WTEYIISMNA  540
NSISSSTNTY LGKMRSNVIG TKFIMYDIQP PYNSSSVSQS GKPSRRFYSK NGSTKVPCSL  600
YSIAEVSYKL NVLGTRGPRR MHCVMHSIPA SSLEAGGTVP CQMDSILARR SVDESFSRIS  660
ISKSSIMDHS MHFSSARFSD SSVGGGPGIR RQALSDKDQC KDIPLILHNK APRWHEQLQC  720
WCLNFRGRVT VASVKNFQLT AAAAQPAAGA PTPPHPAPTP PPEHDKVILQ FGKVAKDMFT  780
MDYRYPLSAF QAFAISLSCF NTKWGCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1s31_A1e-3848180724273tubby isoform a
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G020900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577813.10.0tubby-like F-box protein 13
SwissprotQ53PP50.0TLP13_ORYSJ; Tubby-like F-box protein 13
TrEMBLA0A0E0F9R70.0A0A0E0F9R7_9ORYZ; Tubby-like F-box protein
STRINGBRADI4G24740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.18e-64sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q
    Identification of rice TUBBY-like genes and their evolution.
    FEBS J., 2008. 275(1): p. 163-71
    [PMID:18070109]
  3. Yang Z, et al.
    Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.
    Genomics, 2008. 92(4): p. 246-53
    [PMID:18620041]