PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G029300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 344aa    MW: 36627.5 Da    PI: 4.0147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G029300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.3e-18151493127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                         p f+F+Ptd++lv +yL +++ g + + e++i e+d   + Pw+  +      ++++ ++ +fF +   + ++  r  r +   g+W+ +g
  Brast05G029300.1.p  15 PEFKFDPTDDDLVAHYLLPRALGLPGPHEHAIIEADPGGLPPWEVLErhgvdVFSGSAEQAFFFGSVPDAGHNAGRMVRrVQGGGFWQGQG 105
                         679**********************888899*************963356654445667889998888877775555553889*****999 PP

                 NAM  88 k.dkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127
                         + d +v+       + el      L+fy+ ++  +++t  vmhe+ 
  Brast05G029300.1.p 106 SeDGAVVLLrgdgsELELQFKSSNLTFYESKS--AKSTGFVMHEFV 149
                         834455544566533333556678****6555..559*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-214165IPR003441NAC domain
PROSITE profilePS5100524.06213166IPR003441NAC domain
PfamPF023654.9E-1315149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAASSYGFAM PGLSPEFKFD PTDDDLVAHY LLPRALGLPG PHEHAIIEAD PGGLPPWEVL  60
ERHGVDVFSG SAEQAFFFGS VPDAGHNAGR MVRRVQGGGF WQGQGSEDGA VVLLRGDGSE  120
LELQFKSSNL TFYESKSAKS TGFVMHEFVI VDPPLPGAML TRIRFEKARG RRAGKLAREE  180
SDDDCGLEES VSAGKQPVDD CGGDDALLID GGYGGEYYGA PLGVVFPGSG DFSGDGCYFP  240
DLDTQLEQST GYTQAEYDEF YQQQQYQQFL MFQQYQMEQQ QYYHIGDPSN GGEGYSGGGG  300
GEEEQQQDAG GVXCGGGYDG GSDHGSDWGT GSTISHCGDG AAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G029300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229803.11e-129NAC transcription factor NAM-B1
TrEMBLI1IN181e-140I1IN18_BRADI; Uncharacterized protein
STRINGBRADI4G24100.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1861527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.12e-12NAC domain containing protein 70