PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G036500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 364aa    MW: 39703.4 Da    PI: 6.7687
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G036500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.8e-15266299134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C++ +Tp+WR+gp gn tLCnaCG++y+  +
  Brast05G036500.1.p 266 CTHCRSWETPQWRHGPKGNGTLCNACGIRYKMGK 299
                         *******************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-13260314IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-13260308No hitNo description
Gene3DG3DSA:3.30.50.103.7E-12264299IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.149264297IPR000679Zinc finger, GATA-type
CDDcd002026.24E-15265321No hitNo description
PfamPF003202.6E-13266299IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQKPEPYAVS LNDVPPDLVD GLDLDPPGGG LCSPDDPLDK VMTYVALFDD SFFDDLDLDC  60
SPPPPPPDEE ESSRSALEED GGGALPCAAA PAGTKWSACE VFDGVPEAPR PLSPSSSPAS  120
TTSTASAGPF LGTLEAPDFG EDLRWTVLPR PHHRRTAARR RHVWPVSFPL ALMTSPAAAA  180
ATHDDSNAND DIKDKDFKLI SHCNVGKGSG KRRRSSEPKA QRDNDVKDKD FKLTGYCNVG  240
GGNGNGKRRS AEPKQQRDKD GRLRTCTHCR SWETPQWRHG PKGNGTLCNA CGIRYKMGKL  300
CEEYRPSTSP EFSSLEHSNR HRNVEKIRDR KKQQLKVMSP AVPVTPDSSE VLLRACKYET  360
MPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G036500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239253.11e-159uncharacterized protein LOC104585044
TrEMBLI1IMV81e-158I1IMV8_BRADI; Uncharacterized protein
STRINGBRADI4G23550.11e-158(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-24GATA transcription factor 4