PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G047300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 243aa    MW: 25909.8 Da    PI: 4.2839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G047300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-111352140
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                        +g+WT eEd  l+ +v+++G+g+W+++++  g+ R+ k+c
  Brast05G047300.1.p 13 KGPWTFEEDIVLASYVQEHGPGNWRSVPASTGLARCSKSC 52
                        79*************************************9 PP
2Myb_DNA-binding28.73.2e-0956802248
                        T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                        + W++Ia++++ +Rt++++k++w+++l
  Brast05G047300.1.p 56 P-WAAIASYLP-NRTDNDVKNYWNTHL 80
                        6.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-12552IPR009057Homeodomain-like
PROSITE profilePS5129416.223884IPR017930Myb domain
SMARTSM007178.8E-151282IPR001005SANT/Myb domain
SuperFamilySSF466897.76E-161276IPR009057Homeodomain-like
PfamPF002491.1E-91352IPR001005SANT/Myb domain
CDDcd001673.12E-121580No hitNo description
PfamPF002492.1E-75680IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-105781IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRPPCCDET AKKGPWTFEE DIVLASYVQE HGPGNWRSVP ASTGLARCSK SCPPSPWAAI  60
ASYLPNRTDN DVKNYWNTHL KKRVKKQEAM GTIFALPPEA IGGIFALPPP SESTTYSSSS  120
SSSSSSSSYA YSVDNINRLL DGFMNTSTLP ASAPTPSSQT ASASYVDAGP SAVFEANDCA  180
LPPAFDDYCI FGTSGELINV FAADQQQVSL SSIEKWLFDE VAETVGQLTS SDDTCYSVPI  240
ML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G047300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577718.19e-95myb-related protein 306
TrEMBLI1IMM72e-93I1IMM7_BRADI; Uncharacterized protein
STRINGBRADI4G22637.14e-94(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-40myb domain protein 60