PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G047400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 261aa    MW: 28768.4 Da    PI: 6.9154
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G047400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-0811421748
                        HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++G+g+W+++++  g+ R++k+c++rw +yl
  Brast05G047400.1.p 11 AEHGPGNWRLVPASTGLARCRKSCRLRWVNYL 42
                        69****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071753244IPR001005SANT/Myb domain
SuperFamilySSF466895.43E-151172IPR009057Homeodomain-like
PfamPF002492.5E-71142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-131149IPR009057Homeodomain-like
CDDcd001674.78E-41142No hitNo description
PROSITE profilePS500906.2261242IPR017877Myb-like domain
PROSITE profilePS5129413.38843115IPR017930Myb domain
SMARTSM007174.3E-547113IPR001005SANT/Myb domain
CDDcd001671.90E-450111No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1850115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVRPPCCDKT AEHGPGNWRL VPASTGLARC RKSCRLRWVN YLRPGIRHGS FTPHEDSVIV  60
HLHSLLGNSW ATVSVLAIRL PGWCDDFSMF AWCMHGVRTD NDVKNYWNTH LRKRLEKQEA  120
MGAIFAVPPP PESTSCSSSS SSPYAYSPRS APTKSSQSAS SYANAKPSAV VHAVEANEYT  180
LSPAFDDYSI SCTGTGAELM NFAGDQQPVS LSSIEKWLFE EAVETTDELT SSDACYSVPM  240
LFYEKREETQ VIKLGVKSFT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-141211521105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G047400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577718.11e-103myb-related protein 306
SwissprotB3VTV71e-41MYB60_VITVI; Transcription factor MYB60
TrEMBLI1IMM71e-102I1IMM7_BRADI; Uncharacterized protein
STRINGBRADI4G22637.11e-103(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.17e-44myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]