PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G056900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 193aa    MW: 21011.5 Da    PI: 4.6074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G056900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-181867255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  Brast05G056900.1.p 18 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 67
                        69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-221875IPR016177DNA-binding domain
PROSITE profilePS5103223.671875IPR001471AP2/ERF domain
PfamPF008476.4E-121867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-311875IPR001471AP2/ERF domain
SMARTSM003807.1E-361881IPR001471AP2/ERF domain
CDDcd000188.58E-301875No hitNo description
PRINTSPR003673.6E-121930IPR001471AP2/ERF domain
PRINTSPR003673.6E-125777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEVHDNAAGI AAAAAAEQYR GVRKRKWGKW VSEIREPGKK TRIWLGSFES PEMAAVAHDV  60
AALRLRGRDA RLNFPGLAHL FRRPATAEPD DVRAAALEAA AQVRFRPDLV MQLRPGGHGD  120
GDDDGASPEY RLDDVAWDVL QLGADDLEAQ SPNMWAELAE AMLLAPPVWG GGAPDNDDWA  180
QGSLWDPSCW SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161475163ATERF1
3gcc_A1e-161475163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G056900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275118e-92KJ727511.1 Zea mays clone pUT5370 AP2-EREBP transcription factor (EREB106) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576119.11e-102ethylene-responsive transcription factor ERF022
TrEMBLI1IMA51e-101I1IMA5_BRADI; Uncharacterized protein
STRINGBRADI4G21265.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-27ERF family protein