PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G089700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 471aa    MW: 51492.2 Da    PI: 8.3681
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G089700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.9e-11180208533
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                         k  rr+++NReAAr+sR+RKka+i++Le+
  Brast05G089700.1.p 180 KTLRRLAQNREAARKSRLRKKAYIQQLET 208
                         7789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.5E-6176238IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-7177221No hitNo description
PROSITE profilePS502178.749178221IPR004827Basic-leucine zipper domain
PfamPF001702.3E-8180208IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.69E-7180214No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
PfamPF141446.1E-28269341IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGGFRAEDHH QNQPLELPLG FRTASPPPMI ASSSMSKEST SYDMADFDQA AIFLYLDGHD  60
QQSIQEHRQT LNIFPSQPMH AAEQLTAAKI NGGAAMAAMM LPNGGNPQQP SPRRPEQQQG  120
AAGGPNASPA CLLPNSAKEN KNSSITSLIK KEGSSSGKGA TSSSTDQERE AGVRRTQDPK  180
TLRRLAQNRE AARKSRLRKK AYIQQLETSR IRLSQIEQQV QAARVQGVLL GTGDQHHQLQ  240
GLPNSAPSVA GMFDAEYGRW VEEHGKLIFQ LRAALNEHVP DNQLQALVGA AMAQHDELLN  300
LKAAIARADI FHLLCGVWAS PAERCFLWLG GFRPSDVIKV MLKHVEALSE AQLLGIYNLQ  360
QGVQETEEAL NQGMESLQHS VSDTVAAPEV SAGNFMGHMS LALNKIASME AIVRQADNLR  420
QQTLQKLHQT LNVRQAARCL VAIADYFHRL RAISTLWAAR PRHDQQGPHP *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G089700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576380.10.0transcription factor TGAL7
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLI1IP150.0I1IP15_BRADI; Uncharacterized protein
STRINGBRADI4G27100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.21e-117bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]