PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G109700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 480aa    MW: 55684.3 Da    PI: 8.1265
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G109700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.71.3e-112613091
                FAR1 30 krtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                        +r + Cs++g+ +  k   e+++r + ++r+gCka +k+k++  ++w  +++eleH+H+l+p
  Brast05G109700.1.p  2 SRLYACSRQGSGTFYKMG-EERKRAKISKRVGCKAAVKIKLK-GNEWFYENVELEHTHALNP 61
                        5779**********9999.99999******************.99**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-8261IPR004330FAR1 DNA binding domain
PfamPF105511.2E-28163256IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSRLYACSRQ GSGTFYKMGE ERKRAKISKR VGCKAAVKIK LKGNEWFYEN VELEHTHALN  60
PNACEVRHMR SHKNNDPVIM EYVDELQQSG VSPIATLNVL STLNGDPELL PMNERDLENR  120
RAANLREGQV DDVKKLMAFF RVVKNIFWSH ASCQANYAEF GDVVTFDTTY RSNFYSMPLG  180
MFVGSNHHLQ NVIFGFVLVR DETQKTFEWV FRTFRNCMEG KDPICILTDQ DQAMANALQA  240
VFLKMIHRLR RWHMLNKHAE SLNRLYHSNE GLEDKLFTAV NHPLTPAEFE NAWMEMVSEY  300
ELESDPTLCS LYELRASWVA AYFKDVFCGR MTSTQRSEST NRMVKRHHVN DSTPLHVFAK  360
KMYQVLQKRK YAEGQETIAS QAPPATKTNY PLERQLSRIY TRAVFKKYQE AYVAGTSFQT  420
KNDGPCKFLV YYGREGPTFS WSQHEFKVVC DEEKEEYSCE CKKWEHTGNQ TMGLCNFTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G109700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164017.11e-150protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020164018.11e-150protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020164019.11e-150protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CZY20.0A0A2K2CZY2_BRADI; Uncharacterized protein
STRINGTraes_5BL_8BAA498F1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-67FAR1-related sequence 5