PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G121600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 278aa    MW: 30143.2 Da    PI: 6.0451
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G121600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.55.9e-35100199389
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg. 88 
                          ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai  l   s+ss+++      ++++ ++a+    + 
  Brast05G121600.1.p 100 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIERLSAESASSSRRLnvvrAEGKETEAAE----Ag 186
                         689************************************************************8888855543332222222222....01 PP

                 TCP  89 ............k 89 
                                     +
  Brast05G121600.1.p 187 sgkgrldvekatR 199
                         1223444443322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.931101159IPR017887Transcription factor TCP subgroup
PfamPF036347.7E-34101193IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLPYPNPHRF WISQEASTQQ APNPTFAMPP AYAQHPDQNQ IQHYDHFFPG HGQHFNSETL  60
EAVLRPRPAV VPPGTVGPAL EPAASANNAG GHGRPRKRPF RTDRHSKIRT AQGVRDRRMR  120
LSLDVARDFF ALQDQLGFDK ASKTVDWLLT QSKPAIERLS AESASSSRRL NVVRAEGKET  180
EAAEAGSGKG RLDVEKATRA RSGGGTSVPM EHSTGCEETL NGGSRLVSAP PMSAGDQYYY  240
YDLGELMLSS NGGGGGGEGD DDGEYEEDGD FLDGMQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G121600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5786724e-82KM578672.1 Arthraxon prionodes isolate TK103-vimineum6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786734e-82KM578673.1 Arthraxon prionodes isolate TK103-vimineum8 retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578100.11e-140uncharacterized protein LOC100831781
TrEMBLA0A0Q3PLC01e-139A0A0Q3PLC0_BRADI; Uncharacterized protein
STRINGBRADI4G29980.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.24e-27TCP family protein