PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G124900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 160aa MW: 17566.8 Da PI: 8.2055

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G124900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.1	1e-28	82	139	1	60
ZF-HD_dimer 1 kekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++vrY eC++NhAas+Gg+avDGC+Ef+++ gee +aalkC ACgCHR+FHRr +++e Brast05G124900.1.p 82 CCSVRYGECRRNHAASTGGYAVDGCREFIAD-GEE-GSAALKCVACGCHRSFHRRVQVYE 139 5789************************8.666.5799*************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-25	64	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.4E-27	85	136	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.6E-21	86	134	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.519	87	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSERSCHVCS AYISSLSIGN IASLGEGREE GGYKYAMRWR GLVCAESKLV GSKEADKRKR 60 GHLMMKRLVV LRRCEPILQF RCCSVRYGEC RRNHAASTGG YAVDGCREFI ADGEEGSAAL 120 KCVACGCHRS FHRRVQVYEV AWDYEDDTSS SSSSSSSGD*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G124900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375715	5e-74	AK375715.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3102E24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238164.1	1e-89	zinc-finger homeodomain protein 7 isoform X2
Refseq	XP_024310230.1	2e-89	uncharacterized protein LOC100836392 isoform X1
Refseq	XP_024310231.1	2e-89	uncharacterized protein LOC100836392 isoform X1
Refseq	XP_024310232.1	2e-89	uncharacterized protein LOC100836392 isoform X1
Refseq	XP_024310233.1	2e-89	uncharacterized protein LOC100836392 isoform X1
Swissprot	Q6ER22	8e-33	MIF3_ORYSJ; Mini zinc finger protein 2
TrEMBL	A0A2K2CRA9	1e-88	A0A2K2CRA9_BRADI; Uncharacterized protein
STRING	BRADI4G30227.1	5e-72	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-24	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Brast05G124900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]