PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G126400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 330aa    MW: 35234.6 Da    PI: 8.4218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G126400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29175234159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsae+ +v+e tYegeHnh+
  Brast05G126400.1.p 175 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAENSSVLEATYEGEHNHP 234
                         58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.66170236IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-28171236IPR003657WRKY domain
SuperFamilySSF1182905.75E-25172236IPR003657WRKY domain
SMARTSM007747.4E-34175235IPR003657WRKY domain
PfamPF031061.6E-24176234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDTAPVCLDL MVGLPMAREP SSCTGMGLLT SSPDGGRAAS MTDEEAKILQ AKLAQVSDEN  60
RRLTEMIAHL YGSQVARQSS PSACTAASPT SSKRVRALSP PATSTAASPA SSKKRGRESN  120
SAETSNSREA NCDKKGCTAD ADHVDSPLRD DGSCRRIKVR RVCTRIDPSD TSLVVKDGYQ  180
WRKYGQKVTR DNPSPRAYFR CAFAPSCPVK KKVQRSAENS SVLEATYEGE HNHPHPTSAG  240
ELTASCSTRD GSVPCSISIN SSGPTITLDL TKNGAGVQAQ LPDLKKVCRE VASPEFRREL  300
VEQMARELTG DPNFTGALAA AILQKLPDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181742361374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G126400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597061e-157AK359706.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578125.10.0WRKY transcription factor WRKY76
SwissprotQ6IEK51e-135WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLI1IQ580.0I1IQ58_BRADI; Uncharacterized protein
STRINGBRADI4G30360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-51WRKY DNA-binding protein 40