PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G129800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 647aa    MW: 74916 Da    PI: 8.404
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G129800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.52.5e-14131243291
                FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk......................tekerrtraetrtgCkaklkv 68 
                         fYn+YA+ vGFs +k+ +++s      + t++t++C+++gk   ++                         +k r++++++ t+C+a++ v
  Brast05G129800.1.p 131 FYNTYASIVGFSAKKAGTYHSrgAAVSKATRYTYRCNRSGKIVGKEVLeqrkqrkeqnrmqksqkacpaqIKKPRNNNTKEITDCHARMLV 221
                         9******************99555667899**********97554443456678899*********9998888889999999********* PP

                FAR1  69 kkekdgkwevtkleleHnHelap 91 
                         +++ ++kw  t++e +HnH+l+p
  Brast05G129800.1.p 222 TLK-EEKWIETSIEMQHNHALSP 243
                         ***.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-12131243IPR004330FAR1 DNA binding domain
PfamPF105513.6E-34363457IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MFMITGRDGR SDYTEETDEH DIDQEETLYD HVDCDSVDNN ADTHAVSIAS ETLSGVTHRA  60
EQLDHGHTHR FENQQMAENG AIVEHLSIED IENYLQNEIV IASQTCSQEL RGQHVPHIDM  120
CFSSEAEAFA FYNTYASIVG FSAKKAGTYH SRGAAVSKAT RYTYRCNRSG KIVGKEVLEQ  180
RKQRKEQNRM QKSQKACPAQ IKKPRNNNTK EITDCHARML VTLKEEKWIE TSIEMQHNHA  240
LSPPGESKFL RSHKNMTNEE KLLIRTMNSV KLTSRKIMAI LPSFTGGISS LPYTKKDVSN  300
YRMAIRNENN QNDMMMVIDF FEKRQMQDPH FYYAFRVDNE NKVQNIFWAD GNSRRFYDLY  360
GDCISFDTTY KTNKYNLPFA PFVGITGHGN NCLFACAILQ NETIETFTWI FEEFLQCMGG  420
KMPITIITDQ DVAMKTAIPA VFTGTKHRNC LFHIKKKAEE KCARCFAAKP TLHIEFNDVI  480
NKCQTEDEFV TLWPAKRKKY KVENIKYFQH MWVIRKNFVP VYFKKDFFPF IHSTARSEGT  540
NAIFKDNVGS TYSIISFLGE YQRISDNIAG SEIDLQAAKM YSRNIFYKFQ THLKMTQQVH  600
VEEIEKNVSY EVYKSNIQSP RVRKPTHKAL ENMLLTPTRK QRKQHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G129800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317768.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CSL00.0A0A2K2CSL0_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-76FAR1-related sequence 5