PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G132500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 188aa    MW: 20788.9 Da    PI: 6.6179
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G132500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-0757118246
                         SSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 
                         ++W++ Ede lv a     ++            Wk I+++ +      + +++ qck++w k
  Brast05G132500.1.p  57 KNWSKKEDEWLVSAWLNNSNDpidgnskmsdhFWKQISQEYNmhapqeQQKSAMQCKNHWTK 118
                         58**********************************************99**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-555118IPR009057Homeodomain-like
PROSITE profilePS500906.71358120IPR017877Myb-like domain
CDDcd001670.0015658119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAFFGVAGGS GCRHEDNSPV RGSGTPVSAA YRVEDPANNE EGSESNPVEH VKRGKGKNWS  60
KKEDEWLVSA WLNNSNDPID GNSKMSDHFW KQISQEYNMH APQEQQKSAM QCKNHWTKNT  120
TKVSKFNACY NELKSTYASG QSEDQLMEKV REKYSSAPEC QCCWAVVAAL IEVIGLGHTT  180
NNGTHTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G132500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316450.11e-91glutathione S-transferase T3-like
TrEMBLA0A0Q3J4F93e-90A0A0Q3J4F9_BRADI; Uncharacterized protein
STRINGBRADI3G03310.11e-89(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP449610