PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G134700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 402aa    MW: 43220.2 Da    PI: 4.5517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G134700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19129178255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Brast05G134700.1.p 129 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 178
                         69*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.51E-32129187No hitNo description
SMARTSM003801.2E-37129192IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22129188IPR016177DNA-binding domain
PROSITE profilePS5103223.841129186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-32129187IPR001471AP2/ERF domain
PfamPF008474.0E-12130178IPR001471AP2/ERF domain
PRINTSPR003672.7E-11130141IPR001471AP2/ERF domain
PRINTSPR003672.7E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MCGGAILSGF IPPSAAAAAA AAKKKKKQQQ RVTADALWPG LQRKAPQVEV EDFEADFREF  60
ERDSSEEDAG GDDDDVVEVV PPPPAKAGFA FAAVPEGALP PAVDVVTIPK PVEHDGSGTG  120
AVKRNRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYN TAEEAARAYD AEARKIRGTK  180
AKVNFPDEVP TARKSTVKPI AQKSIQKATA ANSAKLTTPP KTCDNESFSH LSNADNDLFA  240
MFAFDDKKVH AKPAESGDFL PQVKPLVPTE TFGMNMLSDQ SSNSFGSTDF GWDDEAMTPD  300
YTSVFVPDAA YSELAYLEGG ASKRMRIDFG VDLSPQGNDA PDLAQDISAF DPEMKYLPLP  360
YVGSSSDRSM DSLVLTDVMQ DGASNADVWG LDELLMAAGA Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20129189263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20129189566ATERF1
3gcc_A2e-20129189566ATERF1
5wx9_A1e-19112188174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127AKKKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G134700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578162.10.0ethylene-responsive transcription factor 1
TrEMBLI1IQD00.0I1IQD0_BRADI; Uncharacterized protein
STRINGBRADI4G31040.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-33related to AP2 12