PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G136600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 640aa    MW: 74303 Da    PI: 8.6459
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G136600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.45.6e-1430107190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         k+Yn+YA   GF vrk+  +++  ++ i  r++        +++k+      ++ra +r+gCka+l+++++  +g+w v +++ eHnH+la
  Brast05G136600.1.p  30 KYYNSYALLKGFGVRKEDLERKPGTN-IAFRRLFS------SRKKD------TPRALSRCGCKARLEIELHMeSGEWFVRNFVDEHNHPLA 107
                         69****************99985444.55444432......22222......5899**************998****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1130107IPR004330FAR1 DNA binding domain
PfamPF105512.6E-24213292IPR018289MULE transposase domain
PROSITE profilePS509669.198479518IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEPGGVSLED LEEYYMVVNQ TFRSEEEGYK YYNSYALLKG FGVRKEDLER KPGTNIAFRR  60
LFSSRKKDTP RALSRCGCKA RLEIELHMES GEWFVRNFVD EHNHPLAKPN HTAFIRSHRG  120
LSDAQKADVI EYGIGGLQTH QIMEIMEKQH GGYDKVGIEG RDAEFVLNYM SAHKNRDGEF  180
FYKYKTDEEG HLXNLXWADX QSRMXYDAFG GXVVFDSTYX VNKYNLPFVP FIGVNHHRST  240
TVFGCAIVSD ETVASYVWLL KAFLEASQQN PPRSVMTDGD RAMAKAISIV WHIEQNMIRH  300
LRNPKLGDFQ KFVYHAMKVN DFERRWVEFK VKYEITEKDE WINMMYELRK KWSKAYTKGR  360
YFLGMQSNQR SESLNSRPHK NLDRRMSLVD LLEHYDHCLL RIRRNESQLD AEASQTIPFT  420
DLHAEPLERS AARTYTPGMF KRVKVEIIRL VEWEIAEVTR NDGLARYVVC LKRKTHVKYD  480
VRFSFVGPLL KSVSCPCLKF DSEDIPCTHI FSVLKYLGLL TIPSCCVQQR WTMKAKPAFV  540
ADRDGNLHEC LHLFKASRSL EVSKRVIDFL QTISDEEMED DDSDEAAKVG PFXPYFSGSN  600
QASTHTVLDP KPIKSKGAPS KKRWKPFHET FLANQKRQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471475KRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G136600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169082.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169083.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169084.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020169085.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DUR80.0A0A2K2DUR8_BRADI; Uncharacterized protein
STRINGTraes_2DL_10A3AF467.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-87FAR1-related sequence 5