PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G145900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 246aa    MW: 26341.7 Da    PI: 6.5987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G145900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08174214954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Brast05G145900.1.p 174 ARLRRERISERIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 214
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-13164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14167223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5175214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-6187219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDFDLLFGSS PEAQLALMNT MLQLEQALIA DQTSPMASSV DTSSPPISPT QTPPHSHSVS  60
PPAPHVSLSC TTADAGATGY YNDHQDMQYY YSMPPAAYGD AGTGIGAQQE CHVSPGGTCA  120
APAPQRDAMR EMIFHIAALQ PVMNDDDGAA EAAARPAKKR RNVRTSKDPQ SVAARLRRER  180
ISERIRVLQR LVPGGTKMDT ASMLDEAIHY VKFLKSQVQS LELAAAHRAA AFGAAYPALL  240
QHTPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G145900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922086e-87FP092208.1 Phyllostachys edulis cDNA clone: bphyem204g02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578226.11e-104uncharacterized protein LOC100844721
TrEMBLI1IQQ21e-102I1IQQ2_BRADI; Uncharacterized protein
STRINGBRADI4G32060.11e-103(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-27bHLH family protein