PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G150900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 216aa    MW: 23412.4 Da    PI: 9.8268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G150900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-134288354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r+h+e+Er+RR+riN  +++Lr+llP+a       ++Ka+ L ++v+++++L
  Brast05G150900.1.p 42 RSHSEAERKRRQRINAHLATLRSLLPSA-----SQMDKAALLGEVVRHVREL 88
                        78*************************9.....68**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6823988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-104288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-134290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-134291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-104289No hitNo description
SMARTSM003534.2E-114594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-4130187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSHYTMMVPT RSGEAEEAGM EDDERSPATR GGTRGGGGTN SRSHSEAERK RRQRINAHLA  60
TLRSLLPSAS QMDKAALLGE VVRHVRELRG RAPAGFLLPG ESDDVGVEEE EEERGWDARE  120
RTKRPVRAWV CCADRPGLMS ELGRAVRSVS ARAVRAEIAT VAGRTRSVLE LDAGGASRPA  180
LRAALRAVLL GAREELLALE GSYKRQRFSA LISEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G150900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9691023e-51EU969102.1 Zea mays clone 326075 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576618.21e-116transcription factor bHLH30
TrEMBLA0A2K2CRU11e-115A0A2K2CRU1_BRADI; Uncharacterized protein
STRINGBRADI4G32470.11e-113(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.14e-17basic helix-loop-helix 32