PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G156400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 197aa MW: 20737 Da PI: 8.0325

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G156400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.4	1.1e-36	27	86	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC+s++tkfCyynny+++qPr++C++CrryWtkGG+lrnvPvGg++r n++ss Brast05G156400.1.p 27 AEAEPCPRCESRDTKFCYYNNYNTTQPRHYCRSCRRYWTKGGSLRNVPVGGASRSNNSSS 86 67889***************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.0E-31	29	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.81	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-17	37	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MQEPGSRAAP PFAGVDLRRP KGYPAPAEAE PCPRCESRDT KFCYYNNYNT TQPRHYCRSC 60 RRYWTKGGSL RNVPVGGASR SNNSSSSSSP PKRTKNHSKS KRRRVVPQPE PVGTDGSAPA 120 GAATATTEAV ATDDDPAGQP AVETEPSVKL GVGLADAGGK EPGPFEWPSG CDDLGISCWG 180 TGVLADADPA MFLDLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	104	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G156400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354149	9e-64	AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBank	AK360934	9e-64	AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBank	AK377058	9e-64	AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576643.1	1e-102	dof zinc finger protein MNB1A
Swissprot	P38564	2e-47	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	I1IR10	1e-101	I1IR10_BRADI; Uncharacterized protein
STRING	BRADI4G33000.1	1e-101	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-22	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Brast05G156400.1.p

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]