PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G170700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 106aa MW: 12365.1 Da PI: 9.3891

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G170700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.7	3.4e-17	30	102	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 k+Yn+YA GF vrk+ +++ ++ +r f Cskeg+r+ ++ + t+++r++ra +r+gCka+l++k++ Brast05G170700.1.p 30 KYYNSYALLKGFGVRKEDLERKPGTNIAFRRLFSCSKEGYRAVKHFNaTNRKRQPRALSRCGCKARLEIKLHM 102 69******************999999**********999886899999*************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-16	30	101	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MEPGGVSLED LEEYYMVVNQ TFRSEEEGYK YYNSYALLKG FGVRKEDLER KPGTNIAFRR 60 LFSCSKEGYR AVKHFNATNR KRQPRALSRC GCKARLEIKL HMESGE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G170700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314911.1	2e-64	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2DUR8	4e-61	A0A2K2DUR8_BRADI; Uncharacterized protein
STRING	BRADI1G72190.1	9e-61	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-12	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast05G170700.1.p