PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G177000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 230aa MW: 24496.6 Da PI: 10.4974

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G177000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.1	1.2e-38	18	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v +++PwdLp +e + yfFs r+ ++a g r +r ++sgyWkatgk+ Brast05G177000.1.p 18 LPPGFRFHPTDEELVVQYLRRKALARPLPA-AVIPVVhAAATLDPWDLPGV--SEGEAAYFFSLRQAAAAAGGRGSRrRASSGYWKATGKE 105 79*************************9.889999567788**43..456789*******99988776899****** PP NAM 90 kevlsk..............kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v+++ ++ +vg+k+ L+f++g+ +k ++t Wvmheyrl Brast05G177000.1.p 106 KPVFVQfppwsgcgaggngkRRLVVGVKTALAFHSGKGKKHSRTGWVMHEYRL 158 *9999999998876544455*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-44	11	184	IPR003441	NAC domain
PROSITE profile	PS51005	44.821	18	184	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	19	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MERRPAAAGE AARQQPQLPP GFRFHPTDEE LVVQYLRRKA LARPLPAAVI PVVHAAATLD 60 PWDLPGVSEG EAAYFFSLRQ AAAAAGGRGS RRRASSGYWK ATGKEKPVFV QFPPWSGCGA 120 GGNGKRRLVV GVKTALAFHS GKGKKHSRTG WVMHEYRLAA AASTTAEQKK APPGEWVVCR 180 VSLKSGARRP AGAEDRREDA GHSLSPSSSC VTDTSCHVSD QEEISSSSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	15	187	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	15	187	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	15	187	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	15	187	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	15	187	17	171	NAC domain-containing protein 19
3swm_B	1e-30	15	187	17	171	NAC domain-containing protein 19
3swm_C	1e-30	15	187	17	171	NAC domain-containing protein 19
3swm_D	1e-30	15	187	17	171	NAC domain-containing protein 19
3swp_A	1e-30	15	187	17	171	NAC domain-containing protein 19
3swp_B	1e-30	15	187	17	171	NAC domain-containing protein 19
3swp_C	1e-30	15	187	17	171	NAC domain-containing protein 19
3swp_D	1e-30	15	187	17	171	NAC domain-containing protein 19
4dul_A	1e-30	15	187	14	168	NAC domain-containing protein 19
4dul_B	1e-30	15	187	14	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G177000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576724.1	1e-117	NAC domain-containing protein 41
TrEMBL	I1IRM9	1e-116	I1IRM9_BRADI; Uncharacterized protein
STRING	BRADI4G34800.1	1e-116	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	1e-29	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Brast05G177000.1.p