PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G177900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 291aa    MW: 32006.9 Da    PI: 6.0472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G177900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09121168455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+  Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Brast05G177900.1.p 121 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168
                         799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.08E-11115172No hitNo description
SuperFamilySSF474593.14E-17115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16117181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FMFCHGHVVA ASANPEDAAS LEISSGVLDT PPMATASVEK  60
KRRPCREEHT VSLNSAHSPK EPKENTRKRG GKKQSKEMDE EEEEPKGYIH VRARRGQATD  120
SHSLSERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS  180
LSPVLYGFGM DRDVAFSDQL QKIEGMFHEA AAMPSDSAIN RSSTSPAPSQ AIMDTDTSSS  240
PHYSLQGTNG SMSLSQDNGS SIGYMMQTVG EPKEELFNQV VFSNYMCSFQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G177900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238344.20.0transcription factor BEE 1 isoform X1
RefseqXP_010238345.20.0transcription factor BEE 1 isoform X1
TrEMBLA0A0Q3HBX50.0A0A0Q3HBX5_BRADI; Uncharacterized protein
STRINGBRADI4G34870.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-36bHLH family protein