PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G186300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 243aa    MW: 25627.9 Da    PI: 6.5069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G186300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-164092155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + ++GVr++   grWv+e+r+p ++g  +r +lg++ ta+ Aa+a++aa+++l+g
  Brast05G186300.1.p 40 PVHRGVRRRGPAGRWVCEVRVPGKRG--QRLWLGTHLTADSAARAHDAAMLALRG 92
                        579******************95544..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-114092IPR001471AP2/ERF domain
PROSITE profilePS5103219.15141106IPR001471AP2/ERF domain
SMARTSM003801.4E-1341112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-2341108IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-144196IPR016177DNA-binding domain
CDDcd000184.37E-1942108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDAASSSSSH EQHGAACPTP PAPRPKRPAG RTKFKETRHP VHRGVRRRGP AGRWVCEVRV  60
PGKRGQRLWL GTHLTADSAA RAHDAAMLAL RGTCCSSPAA CLLNFPDSAW LLAVPRALPN  120
DLAAVRRAAL AAVASFERLE VVARGDATVP VYDEIASSAS ALPSSMGNAS SWASSSQPSE  180
IGNFDVPVVM GSGMFELDMS GEMDLGVYYA DLAEGLLTEP PRMTPDIGDY DDGGADAALW  240
NY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G186300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804700.0JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.
GenBankJQ1804710.0JQ180471.1 Brachypodium distachyon CBF5 (CBF5) gene, complete cds; CBF6 pseudogene and retrotransposon, complete sequence; and CBF7 (CBF7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576748.11e-118dehydration-responsive element-binding protein 1H
SwissprotA2Z3885e-56DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0905e-56DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLH9C1H11e-116H9C1H1_BRADI; CBF2
STRINGBRADI4G35580.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.16e-08dehydration response element B1A