PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G186800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 241aa    MW: 25612.7 Da    PI: 4.7507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G186800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.6e-154392155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr + + grWv   r+p   g ++kr +lg++ tae Aa+a++aa+++l+g
  Brast05G186800.1.p 43 PVYRGVRLRGSAGRWV---RVP---GmRNKRLWLGTHLTAESAARAHDAAMLALRG 92
                        68**************...788...8788*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-104392IPR001471AP2/ERF domain
PROSITE profilePS5103216.75344105IPR001471AP2/ERF domain
SMARTSM003804.8E-1244111IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1244106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-1944107IPR001471AP2/ERF domain
CDDcd000181.15E-1745107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDGSDQWTNS TSSSSSLDPY MVVWSPPPKR PAGRTKFKET RHPVYRGVRL RGSAGRWVRV  60
PGMRNKRLWL GTHLTAESAA RAHDAAMLAL RGPSAAAAAG LLNFPDSAWL LSVTPPALVA  120
DLDEVQRAAL AAVADFQRRE ASTVPVVNEA ISSASAPSSD NGVSWATSQP SANNGTFEEP  180
VAIGSDMFEL CMPDEMDLGM YYKDLAEGLL MPPPLAPNTG VCWESGDYGD GGADAALWSY  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G186800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238395.11e-121dehydration-responsive element-binding protein 1H
TrEMBLI1IRZ91e-119I1IRZ9_BRADI; Uncharacterized protein
STRINGBRADI4G35620.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.14e-20C-repeat/DRE binding factor 2