PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G186900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 251aa    MW: 26557.7 Da    PI: 4.7895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G186900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.6e-1649101155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr++    rWv+e+r+p ++g  +r +lg++ tae Aa+a++aa+++l g
  Brast05G186900.1.p  49 PVFRGVRRRGAACRWVCEVRVPGKRG--ARLWLGTYVTAEAAARAHDAAMLALGG 101
                         579******************95544..***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1249101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-2550111IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1650110IPR016177DNA-binding domain
PROSITE profilePS5103219.74450109IPR001471AP2/ERF domain
SMARTSM003803.2E-1750115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDMGLEVSSS PSSSLSASSS PEHEAGRPPS PAPAKRPAGR TKFRETRHPV FRGVRRRGAA  60
CRWVCEVRVP GKRGARLWLG TYVTAEAAAR AHDAAMLALG GRGARLNFLD SARLLSVPPA  120
LADLADVRSA AVQAVADFQR REAAIEIAAA ATDEATSRVS ERPSSSGNAG SLETSEPAAD  180
DAKFDELPVA MDSEMFRLDL FPEMDLGMYY YTSLAEALLV DPPPPENTAG AYWDSGDCGE  240
GGADVALWSY *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G186900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804710.0JQ180471.1 Brachypodium distachyon CBF5 (CBF5) gene, complete cds; CBF6 pseudogene and retrotransposon, complete sequence; and CBF7 (CBF7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578467.11e-118dehydration-responsive element-binding protein 1H
SwissprotA2Z3881e-54DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0901e-54DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLH9C1H41e-116H9C1H4_BRADI; CBF5
STRINGBRADI4G35630.11e-117(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-18C-repeat-binding factor 4