PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G187100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 227aa    MW: 23640.4 Da    PI: 9.9577
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G187100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.2e-182068355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +grWvAeI+d      +r r +lg+f+tae+Aa a+++a+++l+g
  Brast05G187100.1.p 20 FLGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEDAASAYDEAARALRG 68
                        67******.7*********....4456*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.5E-341982IPR001471AP2/ERF domain
CDDcd000182.75E-241976No hitNo description
PROSITE profilePS5103219.5991976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-271976IPR001471AP2/ERF domain
PRINTSPR003671.1E-72031IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-182076IPR016177DNA-binding domain
PfamPF008479.7E-122268IPR001471AP2/ERF domain
PRINTSPR003671.1E-74258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAAEGSGRPT ATVQCRGRRF LGVRQRPSGR WVAEIKDSAQ RVRLWLGTFD TAEDAASAYD  60
EAARALRGDS TRTNFAGASS SSPARARASK SLQHAMARAA AGRPSLASAC GGGDQFALAA  120
VFRHWHWQAP PEQRMPGADG ETVERVASAV QPSFVVPRRT EAPPPPAQSV APGAGDVWGA  180
RMGVLEMAAG SGGETDGDKS FKVSSSLIVP SKFGAAATEP FGLEEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-141575162ATERF1
3gcc_A9e-141575162ATERF1
5wx9_A4e-1319751471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G187100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239429.11e-112dehydration-responsive element-binding protein 1C
TrEMBLA0A0Q3IYC41e-110A0A0Q3IYC4_BRADI; Uncharacterized protein
STRINGSi032213m1e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-18related to AP2 11