PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G190600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 212aa    MW: 23255 Da    PI: 6.4187
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G190600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.6e-07333434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++C+ +e+  + lfC  ++  lC+ C ++ H
  Brast05G190600.1.p  3 TICDVCESAVAVLFCAADEAALCRPCDEKVH 33
                        68**************************998 PP
2zf-B_box25.13.7e-085291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        +  +C+ +e+ ++ ++C  +++ lC +C ++ H g    H
  Brast05G190600.1.p 52 KLVRCDICENSPAFFYCDIDGTSLCLSCDMAVHVGgkrtH 91
                        6789****************************96655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
SMARTSM003367.1E-9147IPR000315B-box-type zinc finger
PfamPF006432.9E-5341IPR000315B-box-type zinc finger
CDDcd000212.78E-7345No hitNo description
SMARTSM003367.0E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.6555196IPR000315B-box-type zinc finger
PfamPF006432.9E-65291IPR000315B-box-type zinc finger
CDDcd000212.70E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTICDVCES AVAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLVRCDICE  60
NSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVPMQQIE  120
SENQRDQNKA PHSVPKEQMV SHHHAYDNQA SDGNCNGQGN IDSKMFDLNM RPARNHGQGS  180
SSQTQGVDLS ANNHDSSGVV PTCNLERDTN K*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G190600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741330.0AK374133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578491.11e-152B-box zinc finger protein 18
SwissprotC0SVM53e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLI1IS391e-151I1IS39_BRADI; Uncharacterized protein
STRINGBRADI4G35950.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-76DBB family protein