PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G191600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SRS
Protein Properties Length: 328aa    MW: 33232.5 Da    PI: 8.4231
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G191600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.31.4e-661032503154
              DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkls 92 
                          g++sCqdCGnqakkdC+h+RCRtCCksrgf C thvkstWvpa+krrerqqql+a+++ a  s+ +++ skr+r      + ++++ ++s
  Brast05G191600.1.p 103 GGGVSCQDCGNQAKKDCSHQRCRTCCKSRGFACPTHVKSTWVPASKRRERQQQLHALAAMAGPSSgDHDLSKRRRA-----RISSTTPTTS 188
                         5789****************************************************99888777634444555443.....4556667789 PP

              DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         s+++++ + ++++P+evsseavfrcvr++ vd +e+elaYqt+v+igGhvfkGiL+d G+++
  Brast05G191600.1.p 189 SGDQQMVTVAERFPREVSSEAVFRCVRLGPVDVAEAELAYQTTVNIGGHVFKGILHDVGANN 250
                         999********************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.5E-62105249IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.6E-26107149IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.4E-23200247IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAGFPLGGGG GGGSSPAAPS SSSAHHHQHQ PSSADVSAFL YTAGRGGSFQ LWGQPQHDQQ  60
LTHPFYAPNV IRFAPDPDDH HPSAAALAGG GGASSSTSSR GGGGGVSCQD CGNQAKKDCS  120
HQRCRTCCKS RGFACPTHVK STWVPASKRR ERQQQLHALA AMAGPSSGDH DLSKRRRARI  180
SSTTPTTSSG DQQMVTVAER FPREVSSEAV FRCVRLGPVD VAEAELAYQT TVNIGGHVFK  240
GILHDVGANN AAGASAAAGA GGGSGDYQFR LTGDVSPPAG AAAAGGEAAG GGHVVASSAV  300
VMDPYPTPGL YGSFPAGAPF FHGHPRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G191600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412851e-111AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757670.11e-132protein SHI RELATED SEQUENCE 1
RefseqXP_020192267.11e-132protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3B6LQX11e-131A0A3B6LQX1_WHEAT; Uncharacterized protein
TrEMBLA0A446UH721e-131A0A446UH72_TRITD; Uncharacterized protein
STRINGTraes_5BL_06A206038.11e-132(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-47Lateral root primordium (LRP) protein-related