PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G194200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 885aa    MW: 98073.8 Da    PI: 5.6915
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G194200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.75.1e-05646706154
                         TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl.....gLterqVkvWFqNrRak 54 
                         r+kRt +++ q++e e++     +++ +a++ +  A+kl     ++t +q k+W  Nr+ak
  Brast05G194200.2.p 646 RKKRTIMNDGQVNEIENALVDepEMHKNATSLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 706
                         89***************999834555577899****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-6624707IPR009057Homeodomain-like
PROSITE profilePS5007110.446643710IPR001356Homeobox domain
CDDcd000860.00883646709No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MIDMVSAIEE LSGLTSRELG EMLKESESFV LQCKAEDGGS KQVDMEKLVL SLPLHLLAVC  60
LELGRGSDLT YVLRGIRFLH SLSELATRYT RLEQVLLDDV KLSEQVLDLI LFVLTILSHR  120
KKENHLGASP LIHSSLVAAS LHLLTSYFSS QCHELVHILL AHSKVDIFMD VAFDSLHEDM  180
RLLSLRLSTL STDAFPVGPF DSQLTHFICQ QCEASLQFLL LLCQQKLFRD RILKNKELCR  240
NGGILSLSLT ILKLGVPERL QGSTHIVSSI SRLKAKVLSI VLQLCEAESI SYLDEVATLP  300
KSMQLGQTLA LEVLDLLKAA FGRKEKPAAG SHDKSFPMGS VLISALRLVD VFSDDSNFRS  360
SFITNTIPFL TQILATPHDE FSSSWCSVNM PVMEEDANLE YDPFGAAELA LVAASSMLTE  420
AKANYSCPLR TISMPTITYA QTRTSYVVKI IANLHVFVPN ICEEQERDLF LQKFQKYLLS  480
ESPRPSLDHP ASDEATTVCR NLGSLSRYAK SLIPNHLLNE EDVQLLSEFA YKLQTWCGSS  540
LAVLRTLQDA QNMEESTPTP SMTQDRNARD ETPRNCTIIN CGLLQNSVGQ NLIHLGVART  600
TNTGYPGVST ATSIELQHSR VVEHSKTPEP TKESGLQDDD ERQRKRKKRT IMNDGQVNEI  660
ENALVDEPEM HKNATSLQAW AEKLSGQGSE ITSSQLKNWL NNRKAKLARI AKERGVPSEG  720
DNADKPSTPA TSHFGDSSES AGEESYFPPP RVMNALGISK GNGQLNQGTN DTTTQAEVNQ  780
NIMMSRPFTR SYSFELGRPV LLIDNEGNEI GRGEIFQVEG MAQGKSLTES HICIIDITDL  840
KIEKWRELPH PSEASGRTFQ EAESRHGGVM RVAWDVIRLA PVVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1643647RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G194200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318860.10.0nodulin homeobox isoform X3
TrEMBLA0A0Q3LEZ40.0A0A0Q3LEZ4_BRADI; Uncharacterized protein
STRINGBRADI4G36300.10.0(Brachypodium distachyon)