PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G196100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 323aa    MW: 36316.7 Da    PI: 9.9716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G196100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-1697144148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++l  ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Brast05G196100.1.p  97 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 144
                         79******************************99************97 PP
2Myb_DNA-binding58.21.9e-18150194147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++++eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Brast05G196100.1.p 150 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 194
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2388147IPR009057Homeodomain-like
PROSITE profilePS5129415.40792144IPR017930Myb domain
SuperFamilySSF466894.49E-2996191IPR009057Homeodomain-like
SMARTSM007176.3E-1396146IPR001005SANT/Myb domain
PfamPF002494.2E-1497144IPR001005SANT/Myb domain
CDDcd001677.54E-1099144No hitNo description
PROSITE profilePS5129428.969145199IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-27148199IPR009057Homeodomain-like
SMARTSM007171.3E-17149197IPR001005SANT/Myb domain
PfamPF002499.9E-17150194IPR001005SANT/Myb domain
CDDcd001677.30E-13152195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTWGRGRPTS LTFFSPTQPL EDLPQSSQVP IKSSPFFHPP CAVPARNNNF HCNPPPRTEE  60
SIGKRGGSAR KGKRHRRQLI KSVMGRSPCC EKAHTNKGAW TKEEDDRLTA YIKAHGEGCW  120
RSLPKAAGLL RCGKSCRLRW INYLRPDLKR GNFSEEEDEL IIKLHSLLGN KWSLIAGRLP  180
GRTDNEIKNY WNTHIRRKLL SRGIDPVSHR PTNEHVSNVT ISFEAAREEK GAMFRLDEPK  240
PAIGHDPVDW GQGKPLKCPD LNLDLCISPP FQEDPMKPVK REAGVGVCFS CSLGLPRSSE  300
CKCSNFLGLR TAMLDFRSLE MK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-279619926128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G196100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794101e-155HF679410.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB4 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578527.11e-176myb-related protein Hv1
SwissprotP200261e-137MYB1_HORVU; Myb-related protein Hv1
TrEMBLI1ISA01e-174I1ISA0_BRADI; Uncharacterized protein
STRINGBRADI4G36460.11e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-100myb domain protein 4