PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G202900.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 1295aa    MW: 146382 Da    PI: 8.0179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G202900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.42.6e-2210191079259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          dDg+ WrKYGqK+  g++++r YYrCt++   gC++ k+v+r++ +p +++++Y g+H+++
  Brast05G202900.3.p 1019 DDGFIWRKYGQKDSLGAKYSRDYYRCTHRhsrGCQAMKQVQRTDGNPLLFDVMYAGHHTCT 1079
                          7***************************99999**************************97 PP
2WRKY81.58.5e-2611291190159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          ldDg++WrKYGqK+v g ++pr+YYrC ++   gCp++k+v+r+++dp++++++Y+geH + 
  Brast05G202900.3.p 1129 LDDGFRWRKYGQKDVLGFKYPRAYYRCLYRqqqGCPATKQVQRTDSDPQLFDVVYHGEHICA 1190
                          59*************************9988889*************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147987.38E-923146No hitNo description
SuperFamilySSF525408.75E-45179418IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3005.5E-8199296IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003644.3E-10211226No hitNo description
PfamPF009311.1E-25281444IPR002182NB-ARC
PRINTSPR003644.3E-10352366No hitNo description
SuperFamilySSF520582.04E-16483800IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.7E-9550750IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003644.3E-10656672No hitNo description
Gene3DG3DSA:2.20.25.807.5E-2210081079IPR003657WRKY domain
PROSITE profilePS5081118.96910131076IPR003657WRKY domain
SuperFamilySSF1182901.22E-2010141079IPR003657WRKY domain
SMARTSM007744.4E-3010181080IPR003657WRKY domain
PfamPF031061.5E-2110191078IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-2511231190IPR003657WRKY domain
PROSITE profilePS5081123.13511241187IPR003657WRKY domain
SuperFamilySSF1182902.75E-2311261191IPR003657WRKY domain
SMARTSM007746.8E-3711291191IPR003657WRKY domain
PfamPF031061.9E-2411301189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1295 aa     Download sequence    Send to blast
MACSESLWTV CALVDAMFRL PKKLDRLLVS HGHMLPRGAE DEIPLIKQDL EKMVAILQEH  60
DDSGAEDHTM MIKCLTTEVR ELSYDMEDSI DQYEHAANSR RGIPPRRNKY KVTRRRGKTT  120
ARLPEKLKWR LWMANKIREF SVRSQEALQR YSLLNHLGGN GISRAAAAST RSDASFGSWH  180
PTPYMELVGI DAPMKNLEAW LGKDGDQKLK VVSVVGSGGV GKTTLANELY RKIGGQFECW  240
AFVRMSRKPD VRRLLISMLS QVRPHQPPHT WKVHSLIANI RTHLQDKSGI LITTEIEDAA  300
LRCCGYDSKY VFTLKPLGDD DSSTLFFNTA FGPQHECPPE LNEVSNSIIR KCGGLPLATV  360
AVASLLVGWI GKLEQWEYAN KSLGYSLRTN PTSEGMKQVL NLSYNNLPQH LKACLMYITI  420
YQENYIIQKD DLVKQWIAEG LICATEDKDM EEISRSYFDE LISSRMVQPV HINDNDDVVS  480
CMVHHMIHDF VTHKSLEENF VAAIDHCQTA VTLTDKVRRL SLHFGNAEAM PSPKNMRLSQ  540
VRTLAYFGIF KCLPPIVEFG LLQVLILHLW GDDASISFDL TKISELFRLR YLHVTCNVTL  600
EVPETKMRGL QYLETLKIDA RSLSELTNLQ DLRLTSSRVP PWCLKSKMDS MGSILEKLSK  660
LRSLTLEPSS ILNVGLSSMS ICCDELSSVS SPPVLLQRFE WSPHICTFSS IPKWIGHLDK  720
LCILKIGVTQ LARNDVDVLR GLPALTVLSL FVQAKPAERI IFSKMGFSVL KYFKFKCSVP  780
WLEFEAHAMP NLRKLKLGFD AHGTDKHGTV PVGIEHLSGL KEISAKIWVA VADDPARRAA  840
ELALRHAIKM HQARPTFNIQ YVDGIFSGKG DNNSRLQEEE QRTLQKQYEI TEEDSTSEQH  900
GIFQKGSRKD AHSRFSAFSE WKTVSDKQAD SRTHTQRQIE GMTTGLSSSR SWTKWLKTEA  960
QKEEHRNLQK QYLIMEDSGE QHGVHKYSEN VKKHADNRKT LPRWKTQVKV TSQNAGVGDD  1020
GFIWRKYGQK DSLGAKYSRD YYRCTHRHSR GCQAMKQVQR TDGNPLLFDV MYAGHHTCTQ  1080
GVNVQLQPGQ HDQSSVSVVV NSEGSVLGLE NMQSRMPKRS KHVRLVAPLD DGFRWRKYGQ  1140
KDVLGFKYPR AYYRCLYRQQ QGCPATKQVQ RTDSDPQLFD VVYHGEHICA QYPATSESQL  1200
TCEEVRGSIG GFRSMTPGTS NSQVTEAGSG SGSTVGFPIM SPAMSESSTY EVVSASPARF  1260
WSTPDEVDSM MDDTLDPDLD IFDDFEFPYP PSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-304650034504Disease resistance RPP13-like protein 4
6j5t_F1e-304650034504Disease resistance RPP13-like protein 4
6j5t_G1e-304650034504Disease resistance RPP13-like protein 4
6j5t_L1e-304650034504Disease resistance RPP13-like protein 4
6j5t_O1e-304650034504Disease resistance RPP13-like protein 4
6j5u_A1e-304650034504Disease resistance RPP13-like protein 4
6j5v_A1e-304650034504Disease resistance RPP13-like protein 4
6j5w_A1e-304650034504Disease resistance RPP13-like protein 4
6j6i_C1e-304650034504Disease resistance RPP13-like protein 4
6j6i_F1e-304650034504Disease resistance RPP13-like protein 4
6j6i_G1e-304650034504Disease resistance RPP13-like protein 4
6j6i_L1e-304650034504Disease resistance RPP13-like protein 4
6j6i_O1e-304650034504Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G202900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161816.10.0putative disease resistance RPP13-like protein 2 isoform X3
TrEMBLA0A453LJ220.0A0A453LJ22_AEGTS; Uncharacterized protein
STRINGMLOC_74974.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-28WRKY family protein