PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G205700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 902aa    MW: 99327.6 Da    PI: 7.2886
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G205700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.75.4e-29585635252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Brast05G205700.1.p 585 EKTVSLQVLRQYFAGSLKDAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 635
                         799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.484574655IPR003035RWP-RK domain
PfamPF020421.8E-25587635IPR003035RWP-RK domain
SuperFamilySSF542771.14E-20793888No hitNo description
Gene3DG3DSA:3.10.20.2408.2E-24801884No hitNo description
SMARTSM006666.0E-18803886IPR000270PB1 domain
PROSITE profilePS5174520.308803886IPR000270PB1 domain
PfamPF005648.5E-15804884IPR000270PB1 domain
CDDcd064071.53E-41804884No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MMCSPVLPAP FNPNTSTYDT KIFPRLPPSN ICWFTQDVHP TMLLDSQQKR NSEGKFTYME  60
EGDAHPSISV ARTASSEGAA VDFDLLEQLL SGDNAWLEVA TNASRSTNFF ASPSTFLSDA  120
TTTTTTPASA NNNFWIQSSS TFRQRLDQAL AYIKETQRDT DVLVQLWLPV KSNDGQLVLT  180
TSGQPFTLDK SSDSLKQFRD VSTHYQFSAD VASESSPVGL PGRVFIGKLP EWSPDVRYFT  240
SYEYPRVNHA QNLDVHGTMG LPVFEKGNYS CLGVMELIMT RQKLNFTSEI NNICSALQAV  300
NLRSTEVSSI PRTKFNSASY KDALPEILDV LRAACITHKL PLAQTWVTCD QQGKRGSRHS  360
DENYRYCIST IDAACYVNDP RMQNFHYSCS EHHLLRGQGV AGKAFTTNQP CFLPDIGSST  420
KLEYPLSHHA KIFNLKGAVA IRLRCTRTGT ADFVLEFFLP TDCEALEEQK ELLDSLSGTM  480
RSVCQTLRVV TDKEMEDEAM LEMNELNSFG PQGKNKVQEL SFGGKATEHR EEASWTSLAG  540
TSQRESDLAE LSIHGMLSPG GPGSSLAGVQ TTAQGSKGKR RTKTEKTVSL QVLRQYFAGS  600
LKDAAKNLGV CPTTLKRICR QHGINRWPSR KIKKVDHSLR KLQQIIDSVH GGETAFQLNT  660
LYKDLTNTSV SSDNNLSGSI TVPLTKESNL TEFEKHRHHR LSNNVPSTSH SHSSCSQSSD  720
SSPSCSGGAT KDSPPAGVDL MKSGSPVRHN PIQTLQAENA SINGHISVQE ATGDLLHNIN  780
QNAIGGQHPS RSPSHPKQNS DVGMRVKATF GSEKVRFRLK PECGFQELKQ EMARRLSIVD  840
TSSLIVKYLD DDSEWVLMTC DADLQECLHV YKLANIQTVK ISIHLAAGPE TKVTVGHTGL  900
S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G205700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238468.10.0protein NLP1 isoform X1
TrEMBLA0A0Q3EV320.0A0A0Q3EV32_BRADI; Uncharacterized protein
STRINGBRADI4G37147.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein