PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G211700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 344aa    MW: 36836.4 Da    PI: 7.9074
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G211700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.82.1e-1128130185
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr.....ts 73 
                         +W+++ +  L+ea++ ++   +r+klk  +W ++++ +               +   ++p+qCk+k e+++kry+++ + + +      ++
  Brast05G211700.1.p  28 EWSESGISRLLEAYEAKWLLRNRAKLKWSDWVDIASEVsahcssesaaagkPGGSSAKTPNQCKNKVESMKKRYRAESAAAARAgagaaAN 118
                         5*********************************99999999*******955555589*****************9987665541111134 PP

            trihelix  74 essstcpyfdql 85 
                          +  ++++f ++
  Brast05G211700.1.p 119 AAGPSWRFFGRM 130
                         444566666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1326131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDGLTDADVA PLAAAAAPQQ QQQQKRDEWS ESGISRLLEA YEAKWLLRNR AKLKWSDWVD  60
IASEVSAHCS SESAAAGKPG GSSAKTPNQC KNKVESMKKR YRAESAAAAR AGAGAAANAA  120
GPSWRFFGRM DGLLKGPGTG SSGQVQAELS NGVDLRATPA KAEPEVEVEG GLLRQLLPDA  180
GPGALSELVN ADANGFATER AEKVDCSMQK ESRAADSDAN VSSPRSKEAK EDVEEVDKVW  240
GMPKKRKSSE FDIGKSIELL ASSFMKIEQA RMEMYRETEK MRAEAEIKKG EMELKRTEIM  300
AKTQLQIAKL FAKRLKECSK TSGSSSVTAD ADTLTKKGEN GSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G211700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578632.10.0trihelix transcription factor ASIL1
TrEMBLI1ISR30.0I1ISR3_BRADI; Uncharacterized protein
STRINGBRADI4G37730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-45sequence-specific DNA binding transcription factors