PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G212000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 154aa    MW: 16513.3 Da    PI: 7.7686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G212000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-054971123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C++ Fs++  L  H++ H
  Brast05G212000.1.p 49 FSCNYCHRKFSSSQALGGHQNAH 71
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-64576No hitNo description
Gene3DG3DSA:3.30.160.605.1E-44976IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4894976IPR007087Zinc finger, C2H2
PfamPF139121.4E-54971IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MESRHQLQYG GVSLDLHLEP THNRPRQPST PAAVDHVHGR HHQVREEAFS CNYCHRKFSS  60
SQALGGHQNA HKLERTLAKR NNGSRMHLAA ELAAAPSSSS PAPAAAAVQS WIHGSGGELW  120
ASSTVVTGWA TTAAGWNYCG EEAASEMDLS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G212000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375928e-36AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBankAP0050908e-36AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBankAP0149658e-36AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126178e-36CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239446.11e-53zinc finger protein 2
TrEMBLI1ISR63e-52I1ISR6_BRADI; Uncharacterized protein
STRINGBRADI4G37760.15e-53(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-15zinc finger protein 7