PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G221200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YB

Protein Properties

Length: 176aa MW: 18923.1 Da PI: 4.7046

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G221200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.5	1.8e-14	68	137	26	95
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 + kda e + fi ++++ a+d c++ kr+tin++d++ al ++ f ++vepl++ l+++r+ ++ Brast05G221200.1.p 68 IVNKDAMAAFAESARIFIHYLSATANDVCKEAKRQTINAEDVFKALDEIEFTEFVEPLRTSLEEFRNKNA 137 57899*************************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-31	38	174	IPR009072	Histone-fold
Pfam	PF00808	9.9E-9	40	113	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.16E-25	41	171	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAGETKEPQA ASQGESSKSA APASAPAPAA AAMPEAEVEE LPKTIVRRLV KDKLAQIAGS 60 DEGGADVIVN KDAMAAFAES ARIFIHYLSA TANDVCKEAK RQTINAEDVF KALDEIEFTE 120 FVEPLRTSLE EFRNKNAARR PATGKKPAEK RRKLDKEVPP KDQNNAADDA KEDED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G221200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238535.1	1e-100	DNA polymerase epsilon subunit 3
TrEMBL	I1IT16	2e-99	I1IT16_BRADI; Uncharacterized protein
STRING	BRADI4G38527.1	1e-100	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	5e-35	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Brast05G221200.1.p