PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G226400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 285aa    MW: 31867.8 Da    PI: 7.4746
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G226400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Brast05G226400.1.p 14 KGPWSPEEDRKLKDYIHKHGTGgNWIALPAKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding39.31.5e-1270111346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++ eEd  ++++ +  G++ W+ Ia+ ++ gRt++++k++w++
  Brast05G226400.1.p  70 GFSDEEDRVILNLYASIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                         699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.078962IPR017930Myb domain
SuperFamilySSF466891.58E-2712109IPR009057Homeodomain-like
SMARTSM007174.5E-131364IPR001005SANT/Myb domain
PfamPF002492.0E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-241569IPR009057Homeodomain-like
CDDcd001671.80E-101662No hitNo description
PROSITE profilePS5129421.42463117IPR017930Myb domain
SMARTSM007171.2E-1167115IPR001005SANT/Myb domain
PfamPF002493.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001672.00E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCDKG SVKKGPWSPE EDRKLKDYIH KHGTGGNWIA LPAKAGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSDEEDRVIL NLYASIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLFNI  120
ISHSQIRPSP PPSAAANVDS TLGAADPPLA LFSQLLLEQR HGSSLLFGGD HHYHYQQQQM  180
ASSSVFHDDF DLISSNNSFI FAGLQLQQHE EEEEEIATAQ LQAPPDMTTS GLLQQHQLDH  240
HHQPLYGSSS YEEEHEMIKP LVIAPRPSSF LYAATANPGT RYQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G226400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239462.11e-117transcription factor RAX2
TrEMBLI1IT691e-115I1IT69_BRADI; Uncharacterized protein
STRINGBRADI4G38965.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36