PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G228500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1423aa    MW: 158290 Da    PI: 8.1471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G228500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001513031326122
                          EEET..TTTEEESSHHHHHHHHHH CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                          ++C    C++ Fs++ +L  H r 
  Brast05G228500.1.p 1303 FSCDieGCDMFFSTQQDLLLHKRD 1326
                          899999***************985 PP
2zf-C2H210.70.001713571380223
                          EET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                          kC+  dC+k+F+ +   + H+r+H
  Brast05G228500.1.p 1357 KCTfkDCKKTFKWPWAKTEHMRVH 1380
                          79999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005456.4E-161758IPR003349JmjN domain
PROSITE profilePS5118313.551859IPR003349JmjN domain
PfamPF023758.4E-131952IPR003349JmjN domain
PROSITE profilePS5118433.633184353IPR003347JmjC domain
SMARTSM005589.9E-43184353IPR003347JmjC domain
SuperFamilySSF511971.48E-23198372No hitNo description
PfamPF023732.3E-35217336IPR003347JmjC domain
SMARTSM003551413031325IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9713261355IPR007087Zinc finger, C2H2
SMARTSM003551513261350IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013281350IPR007087Zinc finger, C2H2
SuperFamilySSF576673.91E-1413371393No hitNo description
Gene3DG3DSA:3.30.160.609.4E-1013531381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.46613561385IPR007087Zinc finger, C2H2
SMARTSM003550.00113561380IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013581380IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-913821409IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9713861417IPR007087Zinc finger, C2H2
SMARTSM003550.3913861412IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013881412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1423 aa     Download sequence    Send to blast
MSLPPVDPPE WLRTLPEAPE YRPTLAEFVD PIAYILKIER DASRYGICKI VPPLPAPSRE  60
ATVQRLKASF ASNAAATAPG DASPTFPTRL QQVGLSTKNR RGANRRVWES GERYTLEAFR  120
SKARDMELPR HATPPKHATP LQLEALFWGA CAARPFNVEY GNDMPGSGFA EPEDTGDAAA  180
APRDVGDTDW NMRVAPRARG SLLRAMSRDV AGVTSPMLYV AMLYSWFAWH VEDHELHSLN  240
YLHFGKPKTW YGVPRDAMLA FEDTVRVYGY GDDLNAIMAF QTLNQKTTVL SPAVLLSAGV  300
PCCRLVQNPG EFVITFPGAY HSGFSHGFNC GEATNIATPL WLLVAKEAAI RRASTNCGPM  360
VSHYQLLYKL ALSLRQREPK DFHTIPRSSR LRDKKKKDEA DIIVKEKFVG NVVENNNLLS  420
ILLDKTSCII VPEIAFPRPF FSKMMVPEVI VKQSLAAGHC SVSRQAVENM SVDVALDNIK  480
GVDNVSGPQS VTEASFYACN RKLYETKYGE PDTAALGLST PEMQNGVTDK HRSHREGGLL  540
DHGRLPCVQC GILSFACVAI IQPREAAVQF VMSREGISSS AKVGELSNLD SISNWISGNH  600
GIVPPQGQAS GAHSVNLAQV SDHCRQLYDR NTNGCTSALG LLASMYESSD SEEEKSDDVS  660
TDSEKHAAAN QGKDIQFLGT SDSCPNTVQH ERANLHLYEE GCETRNTASL MKPIKHNSRP  720
VTWSSRDTDI GHFARLGEPG TSYEQCSVYH DLVDDLTVSG VKASPDTCVS RAKSSIESDM  780
LTMLKYNKDS CRMHVFCLEH ALETWTQLQE IGGANVMLLC HPEYPRAESA AKLIAEELGL  840
KHDWKDITFG EATKDDIRRI QLALQDEDAE PASSDWAVKM GINIYYSAKQ SKSPLYSKQI  900
PYNSIIYEAF GQENPDTLTD YGEQRSGATK KRVVGWWCGK AWMSNQAHPL LARSKAMFAA  960
KSHDKVQDEP STLSNIMISR SPSKRISRKK RGDSMEKSGA EKKRCSATDD TALHGGSLGT  1020
NTETISDQSE NFNVHDKHEG DEIEEAPSTQ QYQQHKLQNV DMNLSSKKQK SDKRNSNLNE  1080
ICDEDNDVDR WLNIDAGDNA AIGNLDNSPQ GLDDAKAKSP GKLQGSKRKS SKGKASDDSL  1140
NGVKKLQKVN KKSISRKQNN GRLHDVESGV EATTGNLDNS QQPRLEAVKL KSVGKSQSCK  1200
RKSSKGKTNE DPPDGDKKLQ VVNTKSSSRK QKVDSINRQF CEGPDEDNPM DYVPKDEDEA  1260
TRDNCHKVSE EQTDDVKVKS RLKTQTVKKK TSKRQAGDKE AKFSCDIEGC DMFFSTQQDL  1320
LLHKRDICPV KGCKKKFFCH KYLLQHRKVH MDERPLKCTF KDCKKTFKWP WAKTEHMRVH  1380
TGDRPYKCKE PGCTQTFRFV SDFSRHKRKT GHSNDKRNKE ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A8e-7173744353Transcription factor jumonji (Jmj) family protein
6ip4_A8e-7173744353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391397RDKKKKD
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G228500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238558.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7121e-164JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0Q3PQC40.0A0A0Q3PQC4_BRADI; Uncharacterized protein
STRINGBRADI4G39130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-155relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]