PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G237200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 386aa MW: 41939 Da PI: 5.7057

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G237200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80	2.5e-25	301	350	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++ed++ yF+lpi +AA +L+vc+TvLK iCR+ G++RWPhRk+k++ Brast05G237200.1.p 301 GKMKFEDIAPYFHLPIVEAAEKLDVCATVLKGICRRVGVQRWPHRKVKKI 350 6899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	290	370	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-22	303	350	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MATGAEEEEE EGLGMFADAL PLPGDFDDVL HLLDMPDDAA DPPVLQPPLT AVPAQQQQQH 60 NAEYYDCQPA RTHGFSANAR PYWPRMVSDG GHSSGAVDGE PSTSAAADCS GCQVLREVVH 120 SNGLEIAKLC IHGGAPGVFN HAMADVYAVD NNPGGSALPS MTQHSCIEGR DYNWVRGYLT 180 DYALRRATGN YAVVSDSLSV FHHVLCIDMN PTSIILLDDD GGGERWTPPG TNACRQHVAP 240 DPAAPAAVVQ PTIQIRDTEP DQPAAGPSQP PRRATDVRGQ QQPFHPVAAR SALALQRERT 300 GKMKFEDIAP YFHLPIVEAA EKLDVCATVL KGICRRVGVQ RWPHRKVKKI DREIAKLRRS 360 GNGVWETNQI QRLSADRRRI FDGVE*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MATGAEEEEE EGLGMFADAL PLPGDFDDVL HLLDMPDDAA DPPVLQPPLT AVPAQQQQQH  60
NAEYYDCQPA RTHGFSANAR PYWPRMVSDG GHSSGAVDGE PSTSAAADCS GCQVLREVVH  120
SNGLEIAKLC IHGGAPGVFN HAMADVYAVD NNPGGSALPS MTQHSCIEGR DYNWVRGYLT  180
DYALRRATGN YAVVSDSLSV FHHVLCIDMN PTSIILLDDD GGGERWTPPG TNACRQHVAP  240
DPAAPAAVVQ PTIQIRDTEP DQPAAGPSQP PRRATDVRGQ QQPFHPVAAR SALALQRERT  300
GKMKFEDIAP YFHLPIVEAA EKLDVCATVL KGICRRVGVQ RWPHRKVKKI DREIAKLRRS  360
GNGVWETNQI QRLSADRRRI FDGVE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G237200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310426.1	1e-180	uncharacterized protein LOC112268699
TrEMBL	A0A0Q3EWE2	1e-180	A0A0Q3EWE2_BRADI; Uncharacterized protein
STRING	OPUNC12G06330.1	2e-79	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Brast05G237200.1.p