PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G239700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 737aa    MW: 82864 Da    PI: 6.667
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G239700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.93.9e-24105196289
                FAR1   2 fYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                         fYneYA+++GF  r+ +s++sk + + +++++fvCs+eg  ++++ +    + +++r+r++ r gC+a+++v ++ +++w+v+kle+ HnH
  Brast05G239700.1.p 105 FYNEYARHLGFPFRVGRSRRSKGTeEVVIMKRFVCSREGMYRKKHPSspsgEATKKRERMSMREGCNAMMEVVRD-SNHWVVSKLEKAHNH 194
                         9********************76515689**********99988877899999999****************999.9************** PP

                FAR1  88 el 89 
                         +l
  Brast05G239700.1.p 195 SL 196
                         98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-21105196IPR004330FAR1 DNA binding domain
PfamPF105519.2E-30290381IPR018289MULE transposase domain
PROSITE profilePS5096611.14569605IPR007527Zinc finger, SWIM-type
PfamPF044345.4E-9571602IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-4580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MSFPADFGCA GEHPAQLLDP PLGPARGGGD ELISDYVDCL MSLDTNARSA HNGSLDLGAP  60
VAEASVSASV AGAAERDAAA PAAAEDPQEP SLGMTFESDE AAKAFYNEYA RHLGFPFRVG  120
RSRRSKGTEE VVIMKRFVCS REGMYRKKHP SSPSGEATKK RERMSMREGC NAMMEVVRDS  180
NHWVVSKLEK AHNHSLGTCS RVGYLRARGL LDASSDRIAM MASDGVPFQR QNVLGEGGDA  240
QGLLDYLKKM QANDPAFFHA IQVDKNCCLM NVFWADSRAK TAYQHFGDAV TFDTTYKKNK  300
YMMPFVTFSG VNHHIQPVMF GCALLMEETE CSFVWLFETW LTAMGGKAPC SLVTDQNRAM  360
KAAIGKVFPH TCHRFCKWHI LSRTKQKLAH TYSEHPTLRD EIESCVVESE TIATFERTWM  420
SILDTYDLRK NTWLQAIYNI RQKWVPLYQM DTFSAEISAV QKLETMNDFY KKYFSTKATL  480
EIFLTQIDLS MASRYEDEAK ADMDTFLNMS TTRTASPIEK QAARTYTKAV FTKFQEEFTE  540
SLGFIIQKTK DGCISKYNIM KDENSSDIFC VTYNASNKMA KCSCKYFEFS GILCRHILGV  600
FIIVDSHVLP PDYFLKRWTR KARYDDLLED NGGNHHKDAS QSITSRYNVL CPDAIRCAEK  660
GSGSEAIYRE AKDILRKAYE EIIAYERDPG RVPQRDVINI NEDVTIDDAM TDDPLPDSGR  720
KVTNLLGQFL GSSWSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G239700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193510.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020193511.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020193512.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3EWI50.0A0A0Q3EWI5_BRADI; Uncharacterized protein
STRINGBRADI4G40020.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-153FAR1-related sequence 5