PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G244300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 20011.2 Da    PI: 8.6512
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G244300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.43e-261058250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        rien   r vtf+kRr+g+lKKA ELSvLCdaev viifss+gkl+e +
  Brast05G244300.1.p 10 RIENPAHRRVTFCKRREGLLKKARELSVLCDAEVGVIIFSSQGKLHELA 58
                        8*********************************************965 PP
2K-box27.31.6e-10791512092
               K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                         e+  +++ei  Lq+ +R     + ++++l  L+ Le+ Le+ + + Rs+K++++ ++i+ l +k ke++e+ +
  Brast05G244300.1.p  79 EILLVREEIGHLQHGLRSTYEGGAGDMTLDKLHTLEKGLEQWICQMRSTKMQIMQQEIQLLENKVKEQNEIMN 151
                         788899*************9999******************************************99988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.847161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-27172IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-34160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002658.41E-36373No hitNo description
PRINTSPR004044.9E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.61373163IPR002487Transcription factor, K-box
PfamPF014861.9E-1079148IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVRGKVRMRR IENPAHRRVT FCKRREGLLK KARELSVLCD AEVGVIIFSS QGKLHELATN  60
GNMQSLIGRY QSDVVAEPEI LLVREEIGHL QHGLRSTYEG GAGDMTLDKL HTLEKGLEQW  120
ICQMRSTKMQ IMQQEIQLLE NKVKEQNEIM NMHSVFLGSP YSTHLVTNGN CFFSI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G244300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693281e-132KF469328.1 Brachypodium distachyon MADS-box transcription factor 34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289799.11e-115MADS-box transcription factor 33
SwissprotQ2QW551e-78MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLI1ITN11e-114I1ITN1_BRADI; MADS-box transcription factor 34
STRINGBRADI4G40357.11e-114(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-46AGAMOUS-like 12