PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G255400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 405aa    MW: 41619.3 Da    PI: 6.5538
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G255400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1341.4e-41982582131
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsss 87 
                         a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++      a++ss sas    
  Brast05G255400.1.p  98 AVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFSslnitRASASSASAS---- 184
                         689******************************************************************888755322222222222.... PP

                 TCP  88 g.............................kaaksaakskksqksaasalnlak.esrakarararertrekmr 131
                         +                             +  + ++++++++++++s + +++   r++  ++  er+  k r
  Brast05G255400.1.p 185 AraappfpalalhphphhhhdmstmlgyhhHLIPPQPQQQEPPHDPNSSSGFMRkRYREDLFKEDDERQDPKAR 258
                         23456777777777777878888888887544444447777777777777777667777777776666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.31104158IPR017887Transcription factor TCP subgroup
PfamPF036346.0E-37104243IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDHGGGAGSG GGGAAPSSSN SGGGSGASGS RGGGGGEHHP HHPFYYAGPS VAAPNNNNAQ  60
QFMGSLAITT TSVAADQAPA GKEKAAVAAP VTPSSSGAVA KRPSKDRHTK VDGRGRRIRM  120
PALCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAILAATG TGTIPANFSS LNITRASASS  180
ASASARAAPP FPALALHPHP HHHHDMSTML GYHHHLIPPQ PQQQEPPHDP NSSSGFMRKR  240
YREDLFKEDD ERQDPKAREQ PAAMWAVAPN SAAPGGAFWM LPVSASQAAA AAGARPAEQP  300
MWSFGGSGGG TSTVQAPLQF MSRVSYPGAP AAGMGGSPAD TNIGMLAALN YSRGDAGDQQ  360
EQQHQQPEME PQQRGGGGGN EGEEQDGDDS GQEEDHANNN NSSQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G255400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578849.11e-143transcription factor PCF3
SwissprotQ53PH23e-68PCF3_ORYSJ; Transcription factor PCF3
TrEMBLI1IU011e-142I1IU01_BRADI; Uncharacterized protein
STRINGBRADI4G41430.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-48TCP family protein