PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G257300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 579aa    MW: 63034.7 Da    PI: 10.5114
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G257300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.51.4e-11152186135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C++ +Tp+ R+gp g  tLCnaCG+ y k+g+
  Brast05G257300.1.p 152 CLHCNAAETPQRRSGPMGRGTLCNACGVWYNKTGR 186
                         99****************************99986 PP
2GATA31.32.9e-10313347135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg+++ p  R+gp g +++C aCG +y+k ++
  Brast05G257300.1.p 313 CLHCGSSEPPELREGPMGRREICTACGERYKKGRR 347
                         99******************************986 PP
3GATA52.94.9e-17410444135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg++kTp+WR+gp g +tLCnaCG++y+  +l
  Brast05G257300.1.p 410 CMHCGSSKTPQWREGPMGRSTLCNACGVRYKQGRL 444
                         99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-9146200IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.117146185IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-10147186IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-10148188No hitNo description
CDDcd002025.66E-7151186No hitNo description
PfamPF003209.5E-9152186IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-5307361IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-6310347No hitNo description
Gene3DG3DSA:3.30.50.103.6E-7311347IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-8313347IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-14403465No hitNo description
PROSITE profilePS5011412.98404440IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-14404454IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14408442IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.61E-12409465No hitNo description
PROSITE patternPS003440410435IPR000679Zinc finger, GATA-type
PfamPF003207.8E-15410444IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MATAEEAEEA EGARRGEPPG LGRRRHPRFR RSEAAREDMA GGGREAEGGG ALYVLALAAM  60
VAPAILVSRL EAAVPRKARS RLPRAVPSGW WSSRISFFPP PPPQPDPSEG QESSQRPQAA  120
AKDPPEKQKK RKSFPRPRPD PGERPAKRPK RCLHCNAAET PQRRSGPMGR GTLCNACGVW  180
YNKTGRLPEL VPVARPAVDP PVESPISEPE VPGAIYLVRR SAAERRPPRT EAPAPRPAAV  240
RRPPRTEAPP APAPRPVVER RPPRTEAPPV PAPVPAAERR PPRTEAPPVP AAEQRPPRTE  300
PAPVPAPRPA TSCLHCGSSE PPELREGPMG RREICTACGE RYKKGRRLPE CHPVVRPDTD  360
SPPQSPITAN SPPDSPIWEP EAPRSSGCLA RKSSKSGKTP WRPKDTGKSC MHCGSSKTPQ  420
WREGPMGRST LCNACGVRYK QGRLLPEYRP MASPTFLPSK HANHHRQVLR LHRQKPQSND  480
QEPSQLPPDT NGVNQKWQSK NQEPTRLAPA TNSITKLTPI RDKNLTNMPG CTDEEPVEAP  540
ECTHNPPIVV PRPSSLDSLL LAGPSAPLIV ESDEFAIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14149GGREAEGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G257300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238674.10.0pollen-specific leucine-rich repeat extensin-like protein 2
RefseqXP_010238675.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLI1IU160.0I1IU16_BRADI; Uncharacterized protein
STRINGBRADI4G41570.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-30GATA transcription factor 9