PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G264600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 393aa    MW: 40348.8 Da    PI: 4.8211
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G264600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10129191163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+++kke e+  +e+ +l+  +
  Brast05G264600.1.p 129 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNESMKKEKETVMQEYLTLQETN 191
                         89******************************************************9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-5126192No hitNo description
SMARTSM003381.1E-11129193IPR004827Basic-leucine zipper domain
PfamPF001701.1E-8129191IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.967131194IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.49E-6133188No hitNo description
CDDcd147022.03E-12134184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAGSSQRQCR RGAAGGDEDV ELDAAMALAD MAGAAGAAPP PQPQAERAAA AGDGDEEEEE  60
EASTRLSLEL GRVGIQGAAA TASSPCSSSS SARGCPTQQQ QQQKLLPVAA AGAGGYGARP  120
RHSTLTEAEK EAKRLRRVLA NRESARQTIL RRQAIRDELA RKVADLSSQN ESMKKEKETV  180
MQEYLTLQET NKQLKEQVVA KTADRAPSPV PIAMAMDTAQ AQAPAQQAEA SQQAAMAPPP  240
PPQPGFLYAT AGLPAAPVPG TMPYVWGSWP PAYDPRAGSP TAGAPPPLCL PPLGAWYYPV  300
AGGDPPLPTS SYAARPPFAG GSPGGSGGGG TAGEEEEEDT DDGADPCSLT LGLDVGGDGG  360
GGRADKAATA AEARKRRKEL TRMKHARPGG EE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373378RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G264600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9585025e-73EU958502.1 Zea mays clone 1697405 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757911.21e-129uncharacterized protein LOC100826071
TrEMBLA0A0Q3EXQ11e-128A0A0Q3EXQ1_BRADI; Uncharacterized protein
STRINGBRADI4G42120.11e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.14e-16bZIP family protein