PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G265600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 254aa MW: 27582.8 Da PI: 9.0081

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G265600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.1	1.2e-38	20	156	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk...kvka...eekewyfFskrdkkya.tgkrknratksg 81 ++pGfrF Pt+eel+ +yL++++++ +l++vi+ vd+y ++P+ Lp+ + a + ++w+fF++r+ + + +g r+ r+t sg Brast05G265600.1.p 20 MAPGFRFYPTEEELLGFYLRHRLAAAAatrPPLHRVIPVVDVYAHHPSALPSmagE--AsvrDAEQWFFFCPRAPERElRGGRPARTTPSG 108 579*****************98887666788889***********53442..13335669**98776648******* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 yWkatg+ v+s+ ++el+g+k+t+vfy+grap+g kt+W m+ey+ Brast05G265600.1.p 109 YWKATGSPSYVFSSssSSELIGVKRTMVFYNGRAPTGAKTRWKMNEYK 156 ********98777888*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-42	19	185	IPR003441	NAC domain
PROSITE profile	PS51005	45.595	20	186	IPR003441	NAC domain
Pfam	PF02365	1.6E-22	22	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MATRTSSGRG EEEEEAASAM APGFRFYPTE EELLGFYLRH RLAAAAATRP PLHRVIPVVD 60 VYAHHPSALP SMAGEASVRD AEQWFFFCPR APERELRGGR PARTTPSGYW KATGSPSYVF 120 SSSSSSELIG VKRTMVFYNG RAPTGAKTRW KMNEYKALAH GGPSLQPTTA PPKLRNEFSV 180 CRVYVSTGTL RSFDRRPLNA AGHAQAQAAA YRHQSAPSAA AALDTNLAEN TRDFSSSMIA 240 AAASDDLDFD MDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-27	8	184	5	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-27	8	184	5	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-27	8	184	5	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-27	8	184	5	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-27	8	184	8	166	NAC domain-containing protein 19
3swm_B	3e-27	8	184	8	166	NAC domain-containing protein 19
3swm_C	3e-27	8	184	8	166	NAC domain-containing protein 19
3swm_D	3e-27	8	184	8	166	NAC domain-containing protein 19
3swp_A	3e-27	8	184	8	166	NAC domain-containing protein 19
3swp_B	3e-27	8	184	8	166	NAC domain-containing protein 19
3swp_C	3e-27	8	184	8	166	NAC domain-containing protein 19
3swp_D	3e-27	8	184	8	166	NAC domain-containing protein 19
4dul_A	3e-27	8	184	5	163	NAC domain-containing protein 19
4dul_B	3e-27	8	184	5	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G265600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577031.1	1e-137	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-67	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0Q3HFE8	1e-135	A0A0Q3HFE8_BRADI; Uncharacterized protein
STRING	BRADI4G42180.1	1e-128	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-56	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Brast05G265600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]