PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G291500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 318aa    MW: 34816.6 Da    PI: 6.2319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G291500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.47.9e-20149217359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.........STTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.........dpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+++++++prsYYrCt+    gC+++k v+++++         ++ ++ ++Y g+H ++
  Brast05G291500.1.p 149 DGHQWRKYGQKVINNAKHPRSYYRCTYGqeqGCKATKTVQQQDDngagtacddEQAMFAVVYYGQHSCK 217
                         9*************************977789********9875111111111457999*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-24142219IPR003657WRKY domain
SuperFamilySSF1182907.98E-21143219IPR003657WRKY domain
SMARTSM007748.6E-32147218IPR003657WRKY domain
PROSITE profilePS5081116.111149193IPR003657WRKY domain
PfamPF031068.6E-24149217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKVEGAKNSS RHPSPRRLHG SSPPSQSSQV EALREMARGQ SLMAQLRAVV LPALVVDDER  60
AGVVAQMFQS VLDCSAKAMA ALKLCQIEHD QARADADGVL MADDKKRSVK KVVVFSDNGD  120
NNAKPYRQRK RRRLADESVA LETPVPHYDG HQWRKYGQKV INNAKHPRSY YRCTYGQEQG  180
CKATKTVQQQ DDNGAGTACD DEQAMFAVVY YGQHSCKPPS SSSSSDTDGT VVEGGGGDSR  240
CSSNISVTCT SVVVIDHHRQ SSLESSLLDM ADQEDLATEE YDQLFDVAAY EPLDSDPAWE  300
MDDARGHGHG LLKFGHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-151492171069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132RKRRR
2129133KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G291500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577134.30.0probable WRKY transcription factor 70
TrEMBLA0A0Q3HWA10.0A0A0Q3HWA1_BRADI; Uncharacterized protein
STRINGBRADI4G44370.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-21WRKY DNA-binding protein 70