PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G296500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 191aa MW: 20513.2 Da PI: 6.9893

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G296500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5.2e-43	13	113	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+Ca+dCv+apyfp e+p++fa vh++FGasnv+k+l++lp +r da+sslvyeA arardPvyG++g i+ lq+q++ql+ Brast05G296500.1.p 13 PCASCKLLRRRCARDCVFAPYFPPEDPARFATVHRVFGASNVSKMLQELPAAQRADAVSSLVYEATARARDPVYGCAGAISYLQHQVAQLQ 103 7**************************************************************************************** PP DUF260 92 aelallkeel 101 ++la++++++ Brast05G296500.1.p 104 VQLAVAQAQI 113 ***99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.389	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-43	13	110	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MAGAQGGGSS STPCASCKLL RRRCARDCVF APYFPPEDPA RFATVHRVFG ASNVSKMLQE 60 LPAAQRADAV SSLVYEATAR ARDPVYGCAG AISYLQHQVA QLQVQLAVAQ AQILHRVHPP 120 PSSSSPSPAP PLPLHDLQQL QQQQSLQMDY DYDDDVKAGY GSGLVTQNDL MNSLLLQEAC 180 CGLKKESLWT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-45	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-45	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G296500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238823.1	1e-105	LOB domain-containing protein 4
Swissprot	Q8LBW3	2e-60	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2K2CU80	1e-104	A0A2K2CU80_BRADI; Uncharacterized protein
STRING	BRADI4G44850.1	1e-104	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-51	LBD family protein

Link Out ? help Back to Top
Phytozome	Brast05G296500.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]