PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G297400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 313aa    MW: 34283 Da    PI: 7.3333
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G297400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.87.8e-3168121255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtpeLH +F++av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  Brast05G297400.1.p  68 PRLRWTPELHLCFLRAVQRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 121
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-2964122IPR009057Homeodomain-like
PROSITE profilePS5129412.06364124IPR017930Myb domain
SuperFamilySSF466891.79E-1565122IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2367122IPR006447Myb domain, plants
PfamPF002491.6E-969120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MASVESSIKD FTMEIIGTSK GNDGGSSSND DISSSTVEEE GGGGHHHQDT KAGDLSTSVR  60
PYVRSKNPRL RWTPELHLCF LRAVQRLGGQ DRATPKLVLQ LMNVRGLSIG HVKSHLQMYR  120
SKRIDDSGQV IGGHISFPRA FHHGQSGAVT MMPRFGTNSW RSSFHEPHWL HGHQHFPGSK  180
PYYCYSSAAQ NGQHLARGAA ASSNPDQLMM QLGCAPSPNN HHTMNHQQQK RLVPQSTVEN  240
GDDVQVPLDL NLDLSLGFVT QQRETKRKSS EGCSWMRDGN VGKIGGDEEE DDDESTGTML  300
SLSLFSPRST PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1869123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1869123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1869123357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1869123357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G297400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411712e-72AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence.
GenBankGU0467892e-72GU046789.1 Oryza sativa Japonica Group cultivar Dongjin-byeo myb-like DNA-binding domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577159.11e-157transcription factor NIGT1 isoform X2
TrEMBLI1IV761e-156I1IV76_BRADI; Uncharacterized protein
STRINGBRADI4G44930.11e-154(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-40G2-like family protein