PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G300000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 262aa    MW: 28111.6 Da    PI: 6.7642
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G300000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof107.47.4e-3447101761
              zf-Dof   7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         +cprC+s +tkfCyynnyslsqPry C++CrryWt+GG+lr+vPvGgg+r+++k+
  Brast05G300000.1.p  47 ECPRCHSGDTKFCYYNNYSLSQPRYHCRGCRRYWTQGGSLRDVPVGGGCRNRNKQ 101
                         8*************************************************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2136100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.92546100IPR003851Zinc finger, Dof-type
PfamPF027015.4E-3047100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MYHLFLGFLV LLLPLRACAG FASHEMEEVG MAMNGARQTT AARLRPECPR CHSGDTKFCY  60
YNNYSLSQPR YHCRGCRRYW TQGGSLRDVP VGGGCRNRNK QQQRSAASSS SSSSAMVNLI  120
PDMLPAFVPP PGWGSDLVLP PPAAAPSSFL DILRSGGGLL PIDAAMPLPA MASFGTGMQQ  180
HAMGDTTMVG LEWQPQLTGG INGGAGSSGV AQQHLGNNMT DDINGGQGSS RDDYYWYWID  240
DDNNGGPWQS LINNNNTSSL M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G300000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281318e-34AB028131.2 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-10.
GenBankAK1072948e-34AK107294.1 Oryza sativa Japonica Group cDNA clone:002-126-C02, full insert sequence.
GenBankAP0055108e-34AP005510.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0009N02.
GenBankAP0149588e-34AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126108e-34CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310444.13e-97dof zinc finger protein DOF1.6-like
TrEMBLA0A2K2CUC11e-103A0A2K2CUC1_BRADI; Uncharacterized protein (Fragment)
STRINGTraes_5BL_44A8BCF95.13e-33(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.18e-30Dof family protein