PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G300100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 367aa MW: 39004.1 Da PI: 8.6639

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G300100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	109.1	2.2e-34	90	148	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e++++cprC+s +tkfCyynny+lsqPry C++C+ryWt GGalrnvPvGggrr+++ Brast05G300100.1.p 90 PERNIECPRCHSFDTKFCYYNNYNLSQPRYHCRGCERYWTVGGALRNVPVGGGRRNRNM 148 67899*************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-15	88	134	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-29	93	146	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.655	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MYRLFLGFLF LLPLPPCALD RHEMEEMSKS INGAHGGQAA ASRPGERRKA VARPQPEQKM 60 KEAGKSTNGA GDGQGGRRKA KATVVVRPQP ERNIECPRCH SFDTKFCYYN NYNLSQPRYH 120 CRGCERYWTV GGALRNVPVG GGRRNRNMPS SSRGKLPVAL AASPASTLAA TSSMSMSMAD 180 FPNFISPPPG IGELPMDTDL MLPSNPEASS SSSFLDMLRS REGLLDAGMP HNQNNAGGYF 240 AGAGIGMAMP LRPQPPLPFG IGGSTTPMLQ PTTAFQDGEK LGGGSSSVGA MPLPMSTMEL 300 NNWQPQLNGA NEGAQPVGVN GVTAAMDIIS NTTNGGDGSS RDCYLINNNH NHGGLWQSLM 360 NDSSLM*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MYRLFLGFLF LLPLPPCALD RHEMEEMSKS INGAHGGQAA ASRPGERRKA VARPQPEQKM  60
KEAGKSTNGA GDGQGGRRKA KATVVVRPQP ERNIECPRCH SFDTKFCYYN NYNLSQPRYH  120
CRGCERYWTV GGALRNVPVG GGRRNRNMPS SSRGKLPVAL AASPASTLAA TSSMSMSMAD  180
FPNFISPPPG IGELPMDTDL MLPSNPEASS SSSFLDMLRS REGLLDAGMP HNQNNAGGYF  240
AGAGIGMAMP LRPQPPLPFG IGGSTTPMLQ PTTAFQDGEK LGGGSSSVGA MPLPMSTMEL  300
NNWQPQLNGA NEGAQPVGVN GVTAAMDIIS NTTNGGDGSS RDCYLINNNH NHGGLWQSLM  360
NDSSLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G300100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310783.1	1e-143	dof zinc finger protein 3 isoform X1
TrEMBL	A0A2K2CUD8	6e-94	A0A2K2CUD8_BRADI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50365	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-20	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Brast05G300100.1.p